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Report for CCDS77270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77270.1 Public Homo sapiens 19 GATAD2A 24 110 108 CCDS HistoryNCBI Gene:54815Re-query CCDS DB by CCDS ID:77270.1Re-query CCDS DB by GeneID:54815See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 77270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404158.5 ENSP00000384899.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000404158.5Link to Ensembl Protein Viewer:ENSP00000384899.2Re-query CCDS DB by Nucleotide ID:ENST00000404158Re-query CCDS DB by Protein ID:ENSP00000384899
Original member Current member EBI ENST00000683918.1 ENSP00000508398.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683918.1Link to Ensembl Protein Viewer:ENSP00000508398.1Re-query CCDS DB by Nucleotide ID:ENST00000683918Re-query CCDS DB by Protein ID:ENSP00000508398
Original member Current member NCBI NM_001300946.3 NP_001287875.1 Accepted alive Link to Nucleotide Sequence:NM_001300946.3Link to Protein Sequence:NP_001287875.1Re-query CCDS DB by Nucleotide ID:NM_001300946Re-query CCDS DB by Protein ID:NP_001287875Link to BLAST:NP_001287875.1
Original member Current member NCBI NM_001384511.1 NP_001371440.1 Accepted alive Link to Nucleotide Sequence:NM_001384511.1Link to Protein Sequence:NP_001371440.1Re-query CCDS DB by Nucleotide ID:NM_001384511Re-query CCDS DB by Protein ID:NP_001371440Link to BLAST:NP_001371440.1
Original member Current member NCBI NM_001384512.1 NP_001371441.1 Accepted alive Link to Nucleotide Sequence:NM_001384512.1Link to Protein Sequence:NP_001371441.1Re-query CCDS DB by Nucleotide ID:NM_001384512Re-query CCDS DB by Protein ID:NP_001371441Link to BLAST:NP_001371441.1
Original member Current member NCBI NM_001384513.1 NP_001371442.1 Accepted alive Link to Nucleotide Sequence:NM_001384513.1Link to Protein Sequence:NP_001371442.1Re-query CCDS DB by Nucleotide ID:NM_001384513Re-query CCDS DB by Protein ID:NP_001371442Link to BLAST:NP_001371442.1
Original member Current member NCBI NM_001384514.1 NP_001371443.1 Accepted alive Link to Nucleotide Sequence:NM_001384514.1Link to Protein Sequence:NP_001371443.1Re-query CCDS DB by Nucleotide ID:NM_001384514Re-query CCDS DB by Protein ID:NP_001371443Link to BLAST:NP_001371443.1
Original member Current member NCBI NM_001384515.1 NP_001371444.1 Accepted alive Link to Nucleotide Sequence:NM_001384515.1Link to Protein Sequence:NP_001371444.1Re-query CCDS DB by Nucleotide ID:NM_001384515Re-query CCDS DB by Protein ID:NP_001371444Link to BLAST:NP_001371444.1
Original member Current member NCBI NM_001384516.1 NP_001371445.1 Accepted alive Link to Nucleotide Sequence:NM_001384516.1Link to Protein Sequence:NP_001371445.1Re-query CCDS DB by Nucleotide ID:NM_001384516Re-query CCDS DB by Protein ID:NP_001371445Link to BLAST:NP_001371445.1
Original member Current member NCBI NM_001384517.1 NP_001371446.1 Accepted alive Link to Nucleotide Sequence:NM_001384517.1Link to Protein Sequence:NP_001371446.1Re-query CCDS DB by Nucleotide ID:NM_001384517Re-query CCDS DB by Protein ID:NP_001371446Link to BLAST:NP_001371446.1
Original member Current member NCBI NM_001384518.1 NP_001371447.1 Accepted alive Link to Nucleotide Sequence:NM_001384518.1Link to Protein Sequence:NP_001371447.1Re-query CCDS DB by Nucleotide ID:NM_001384518Re-query CCDS DB by Protein ID:NP_001371447Link to BLAST:NP_001371447.1
Original member Current member NCBI NM_001384519.1 NP_001371448.1 Accepted alive Link to Nucleotide Sequence:NM_001384519.1Link to Protein Sequence:NP_001371448.1Re-query CCDS DB by Nucleotide ID:NM_001384519Re-query CCDS DB by Protein ID:NP_001371448Link to BLAST:NP_001371448.1
Original member Current member NCBI NM_001384521.1 NP_001371450.1 Accepted alive Link to Nucleotide Sequence:NM_001384521.1Link to Protein Sequence:NP_001371450.1Re-query CCDS DB by Nucleotide ID:NM_001384521Re-query CCDS DB by Protein ID:NP_001371450Link to BLAST:NP_001371450.1
Original member Current member NCBI NM_001384522.1 NP_001371451.1 Accepted alive Link to Nucleotide Sequence:NM_001384522.1Link to Protein Sequence:NP_001371451.1Re-query CCDS DB by Nucleotide ID:NM_001384522Re-query CCDS DB by Protein ID:NP_001371451Link to BLAST:NP_001371451.1
Original member Current member NCBI NM_001384523.1 NP_001371452.1 Accepted alive Link to Nucleotide Sequence:NM_001384523.1Link to Protein Sequence:NP_001371452.1Re-query CCDS DB by Nucleotide ID:NM_001384523Re-query CCDS DB by Protein ID:NP_001371452Link to BLAST:NP_001371452.1
Original member Current member NCBI NM_001384524.1 NP_001371453.1 Accepted alive Link to Nucleotide Sequence:NM_001384524.1Link to Protein Sequence:NP_001371453.1Re-query CCDS DB by Nucleotide ID:NM_001384524Re-query CCDS DB by Protein ID:NP_001371453Link to BLAST:NP_001371453.1
Original member Current member NCBI NM_001384525.1 NP_001371454.1 Accepted alive Link to Nucleotide Sequence:NM_001384525.1Link to Protein Sequence:NP_001371454.1Re-query CCDS DB by Nucleotide ID:NM_001384525Re-query CCDS DB by Protein ID:NP_001371454Link to BLAST:NP_001371454.1
Original member Current member NCBI NM_001384526.1 NP_001371455.1 Accepted alive Link to Nucleotide Sequence:NM_001384526.1Link to Protein Sequence:NP_001371455.1Re-query CCDS DB by Nucleotide ID:NM_001384526Re-query CCDS DB by Protein ID:NP_001371455Link to BLAST:NP_001371455.1
Original member Current member NCBI NM_001384527.1 NP_001371456.1 Accepted alive Link to Nucleotide Sequence:NM_001384527.1Link to Protein Sequence:NP_001371456.1Re-query CCDS DB by Nucleotide ID:NM_001384527Re-query CCDS DB by Protein ID:NP_001371456Link to BLAST:NP_001371456.1
Original member Current member NCBI NM_001384528.1 NP_001371457.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384528.1Link to Protein Sequence:NP_001371457.1Re-query CCDS DB by Nucleotide ID:NM_001384528Re-query CCDS DB by Protein ID:NP_001371457Link to BLAST:NP_001371457.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287875.1 634 Q86YP4-3 634 100% 0 0
NP_001371440.1 634 Q86YP4-3 634 100% 0 0
NP_001371441.1 634 Q86YP4-3 634 100% 0 0
NP_001371442.1 634 Q86YP4-3 634 100% 0 0
NP_001371443.1 634 Q86YP4-3 634 100% 0 0
NP_001371444.1 634 Q86YP4-3 634 100% 0 0
NP_001371445.1 634 Q86YP4-3 634 100% 0 0
NP_001371446.1 634 Q86YP4-3 634 100% 0 0
NP_001371447.1 634 Q86YP4-3 634 100% 0 0
NP_001371448.1 634 Q86YP4-3 634 100% 0 0
NP_001371450.1 634 Q86YP4-3 634 100% 0 0
NP_001371451.1 634 Q86YP4-3 634 100% 0 0
NP_001371452.1 634 Q86YP4-3 634 100% 0 0
NP_001371453.1 634 Q86YP4-3 634 100% 0 0
NP_001371454.1 634 Q86YP4-3 634 100% 0 0
NP_001371455.1 634 Q86YP4-3 634 100% 0 0
NP_001371456.1 634 Q86YP4-3 634 100% 0 0
NP_001371457.1 634 Q86YP4-3 634 100% 0 0

Chromosomal Locations for CCDS 77270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19465346 19465614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19492306 19492438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19492581 19492712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19494294 19494383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19495754 19495885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19496052 19496219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19498443 19498722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19501118 19501416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19501969 19502043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19502331 19502526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19505344 19505474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGACCGAAGAAGCATGCCGAACACGGAGTCAGAAACGAGCGCTTGAACGGGACCCAACAGAGGACGATG
TGGAGAGCAAGAAAATAAAAATGGAGAGAGGATTGTTGGCTTCAGATTTAAACACTGACGGAGACATGAG
GGTGACACCTGAGCCGGGAGCAGGTCCAACCCAAGGATTGCTGAGGGCAACAGAGGCCACGGCCATGGCC
ATGGGCAGAGGCGAAGGGCTGGTGGGCGATGGGCCCGTGGACATGCGCACCTCACACAGTGACATGAAGT
CCGAGAGGAGACCCCCCTCACCTGACGTGATTGTGCTCTCCGACAACGAGCAGCCCTCGAGCCCGAGAGT
GAATGGGCTGACCACGGTGGCCTTGAAGGAGACTAGCACCGAGGCCCTCATGAAAAGCAGTCCTGAAGAA
CGAGAAAGGATGATCAAGCAGCTGAAGGAAGAATTGAGGTTAGAAGAAGCAAAACTCGTGTTGTTGAAAA
AGTTGCGGCAGAGTCAAATACAAAAGGAAGCCACCGCCCAGAAGCCCACAGGTTCTGTTGGGAGCACCGT
GACCACCCCTCCCCCGCTTGTTCGGGGCACTCAGAACATTCCTGCTGGCAAGCCATCACTCCAGACCTCT
TCAGCTCGGATGCCCGGCAGTGTCATACCCCCGCCCCTGGTCCGAGGTGGGCAGCAGGCGTCCTCGAAGC
TGGGGCCACAGGCGAGCTCACAGGTCGTCATGCCCCCACTCGTCAGGGGGGCTCAGCAAATCCACAGCAT
TAGGCAACATTCCAGCACAGGGCCACCGCCCCTCCTCCTGGCCCCCCGGGCGTCGGTGCCCAGTGTGCAG
ATTCAGGGACAGAGGATCATCCAGCAGGGCCTCATCCGCGTCGCCAATGTTCCCAACACCAGCCTGCTCG
TCAACATCCCACAGCCCACCCCAGCATCACTGAAGGGGACAACAGCCACCTCCGCTCAGGCCAACTCCAC
CCCCACTAGTGTGGCCTCTGTGGTCACCTCTGCCGAGTCTCCAGCAAGCCGACAGGCGGCCGCCAAGCTG
GCGCTGCGCAAACAGCTGGAGAAGACGCTACTCGAGATCCCCCCACCCAAGCCCCCAGCCCCAGAGATGA
ACTTCCTGCCCAGCGCCGCCAACAACGAGTTCATCTACCTGGTCGGCCTGGAGGAGGTGGTGCAGAACCT
ACTGGAGACACAAGCAGGCAGGATGTCGGCCGCCACTGTGCTGTCCCGGGAGCCCTACATGTGTGCACAG
TGCAAGACGGACTTCACGTGCCGCTGGCGGGAGGAGAAGAGCGGCGCCATCATGTGTGAGAACTGCATGA
CAACCAACCAGAAGAAGGCGCTCAAGGTGGAGCACACCAGCCGGCTGAAGGCCGCCTTTGTGAAGGCGCT
GCAGCAGGAACAGGAGATTGAGCAGCGGCTCCTGCAGCAGGGCACGGCCCCTGCACAGGCCAAGGCCGAG
CCCACCGCTGCCCCACACCCCGTGCTGAAGCAGGTCATAAAACCCCGGCGTAAGTTGGCGTTCCGCTCAG
GAGAGGCCCGCGACTGGAGTAACGGGGCTGTGCTACAGGCCTCCAGCCAGCTGTCCCGGGGTTCGGCCAC
GACGCCCCGAGGTGTCCTGCACACGTTCAGTCCGTCACCCAAACTGCAGAACTCAGCCTCGGCCACAGCC
CTGGTCAGCAGGACCGGCAGACATTCTGAGAGAACCGTGAGCGCCGGCAAGGGCAGCGCCACCTCCAACT
GGAAGAAGACGCCCCTCAGCACAGGCGGGACCCTTGCGTTTGTCAGCCCAAGCCTGGCGGTGCACAAGAG
CTCCTCGGCCGTGGACCGCCAGCGAGAGTACCTCCTGGACATGATCCCACCCCGCTCCATCCCCCAGTCA
GCCACGTGGAAATAG

Translation (634 aa):
MTEEACRTRSQKRALERDPTEDDVESKKIKMERGLLASDLNTDGDMRVTPEPGAGPTQGLLRATEATAMA
MGRGEGLVGDGPVDMRTSHSDMKSERRPPSPDVIVLSDNEQPSSPRVNGLTTVALKETSTEALMKSSPEE
RERMIKQLKEELRLEEAKLVLLKKLRQSQIQKEATAQKPTGSVGSTVTTPPPLVRGTQNIPAGKPSLQTS
SARMPGSVIPPPLVRGGQQASSKLGPQASSQVVMPPLVRGAQQIHSIRQHSSTGPPPLLLAPRASVPSVQ
IQGQRIIQQGLIRVANVPNTSLLVNIPQPTPASLKGTTATSAQANSTPTSVASVVTSAESPASRQAAAKL
ALRKQLEKTLLEIPPPKPPAPEMNFLPSAANNEFIYLVGLEEVVQNLLETQAGRMSAATVLSREPYMCAQ
CKTDFTCRWREEKSGAIMCENCMTTNQKKALKVEHTSRLKAAFVKALQQEQEIEQRLLQQGTAPAQAKAE
PTAAPHPVLKQVIKPRRKLAFRSGEARDWSNGAVLQASSQLSRGSATTPRGVLHTFSPSPKLQNSASATA
LVSRTGRHSERTVSAGKGSATSNWKKTPLSTGGTLAFVSPSLAVHKSSSAVDRQREYLLDMIPPRSIPQS
ATWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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