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Report for CCDS776.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
776.1 Public Homo sapiens 1 SLC30A7 24 110 108 CCDS HistoryNCBI Gene:148867Re-query CCDS DB by CCDS ID:776.1Re-query CCDS DB by GeneID:148867See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 776.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357650.9 ENSP00000350278.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357650.9Link to Ensembl Protein Viewer:ENSP00000350278.4Re-query CCDS DB by Nucleotide ID:ENST00000357650Re-query CCDS DB by Protein ID:ENSP00000350278
Original member Current member EBI ENST00000370112.8 ENSP00000359130.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370112.8Link to Ensembl Protein Viewer:ENSP00000359130.4Re-query CCDS DB by Nucleotide ID:ENST00000370112Re-query CCDS DB by Protein ID:ENSP00000359130
Original member Current member NCBI NM_001144884.2 NP_001138356.1 Accepted alive Link to Nucleotide Sequence:NM_001144884.2Link to Protein Sequence:NP_001138356.1Re-query CCDS DB by Nucleotide ID:NM_001144884Re-query CCDS DB by Protein ID:NP_001138356Link to BLAST:NP_001138356.1
Original member Current member NCBI NM_133496.5 NP_598003.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133496.5Link to Protein Sequence:NP_598003.2Re-query CCDS DB by Nucleotide ID:NM_133496Re-query CCDS DB by Protein ID:NP_598003Link to BLAST:NP_598003.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138356.1 376 Q8NEW0 376 100% 0 0
NP_598003.2 376 Q8NEW0 376 100% 0 0

Chromosomal Locations for CCDS 776.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 100896263 100896342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100896570 100896671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100906852 100906965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100911063 100911150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100912112 100912238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100913663 100913806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100918077 100918127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100921706 100921841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100961828 100961918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100965769 100965918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100974810 100974857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGTTGCCCCTGTCCATCAAAGACGATGAATACAAACCACCCAAGTTCAATTTGTTCGGCAAGATCTCGG
GCTGGTTTAGGTCTATACTGTCCGACAAGACTTCCCGGAACCTGTTTTTCTTCCTGTGCCTGAACCTCTC
TTTCGCTTTTGTGGAACTACTCTACGGCATCTGGAGCAACTGCTTAGGCTTGATTTCCGACTCTTTTCAC
ATGTTTTTCGATAGCACTGCCATTTTGGCTGGACTGGCAGCTTCTGTTATTTCAAAATGGAGAGATAATG
ATGCTTTCTCCTATGGGTATGTTAGAGCGGAAGTTCTGGCTGGCTTTGTCAATGGCCTATTTTTGATCTT
CACTGCTTTTTTTATTTTCTCAGAAGGAGTTGAGAGAGCATTAGCCCCTCCAGATGTCCACCATGAGAGA
CTGCTTCTTGTTTCCATTCTTGGGTTTGTGGTAAACCTAATAGGAATATTTGTTTTCAAACATGGAGGTC
ATGGACATTCTCATGGCTCTGGCCACGGACACAGTCATTCCCTCTTTAATGGTGCTCTAGATCAGGCACA
TGGCCATGTCGATCATTGCCATAGCCATGAAGTGAAACATGGTGCTGCACATAGCCATGATCATGCTCAT
GGACATGGACACTTTCATTCTCATGATGGCCCGTCCTTAAAAGAAACAACAGGACCCAGCAGACAGATTT
TACAAGGTGTATTTTTACATATCCTAGCAGATACACTTGGAAGTATTGGTGTAATTGCTTCTGCCATCAT
GATGCAAAATTTTGGTCTGATGATAGCAGATCCTATCTGTTCAATTCTTATAGCCATTCTTATAGTTGTA
AGTGTTATTCCTCTTTTAAGAGAATCTGTTGGAATATTAATGCAGAGAACTCCTCCCCTATTAGAAAATA
GTCTGCCTCAGTGCTATCAGAGGGTACAGCAGTTGCAAGGAGTTTACAGTTTACAGGAACAGCACTTCTG
GACTTTATGTTCTGACGTTTATGTTGGGACCTTGAAATTAATAGTAGCACCTGATGCTGATGCTAGGTGG
ATTTTAAGCCAAACACATAATATTTTTACTCAGGCTGGAGTGAGACAGCTCTACGTACAGATTGACTTTG
CAGCCATGTAG

Translation (376 aa):
MLPLSIKDDEYKPPKFNLFGKISGWFRSILSDKTSRNLFFFLCLNLSFAFVELLYGIWSNCLGLISDSFH
MFFDSTAILAGLAASVISKWRDNDAFSYGYVRAEVLAGFVNGLFLIFTAFFIFSEGVERALAPPDVHHER
LLLVSILGFVVNLIGIFVFKHGGHGHSHGSGHGHSHSLFNGALDQAHGHVDHCHSHEVKHGAAHSHDHAH
GHGHFHSHDGPSLKETTGPSRQILQGVFLHILADTLGSIGVIASAIMMQNFGLMIADPICSILIAILIVV
SVIPLLRESVGILMQRTPPLLENSLPQCYQRVQQLQGVYSLQEQHFWTLCSDVYVGTLKLIVAPDADARW
ILSQTHNIFTQAGVRQLYVQIDFAAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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