NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS77790.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77790.1 Public Homo sapiens 3 SIDT1 24 110 108 CCDS HistoryNCBI Gene:54847Re-query CCDS DB by CCDS ID:77790.1Re-query CCDS DB by GeneID:54847See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 77790.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393830.4 ENSP00000377416.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393830.4Link to Ensembl Protein Viewer:ENSP00000377416.4Re-query CCDS DB by Nucleotide ID:ENST00000393830Re-query CCDS DB by Protein ID:ENSP00000377416
Original member Current member NCBI NM_001308350.2 NP_001295279.1 Accepted alive Link to Nucleotide Sequence:NM_001308350.2Link to Protein Sequence:NP_001295279.1Re-query CCDS DB by Nucleotide ID:NM_001308350Re-query CCDS DB by Protein ID:NP_001295279Link to BLAST:NP_001295279.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295279.1 832 Q9NXL6-2 832 100% 0 0

Chromosomal Locations for CCDS 77790.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113533022 113533243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113566420 113566541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113567540 113567710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113576922 113576967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113580608 113580709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113581361 113581444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113583409 113583496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113584698 113584769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113585177 113585270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113593005 113593048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113601588 113601659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113603005 113603150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113603960 113604033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113604910 113604976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113607041 113607114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113608094 113608217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113608419 113608536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113611008 113611144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113612086 113612194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113615063 113615077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113616100 113616176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113619680 113619726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113623427 113623532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113623623 113623733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113626102 113626215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113627646 113627708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2499 nt):
ATGCGCGGCTGCCTGCGGCTCGCGCTGCTCTGCGCGCTGCCCTGGCTCCTGCTGGCGGCGTCGCCCGGGC
ACCCGGCGAAATCCCCCAGGCAGCCCCCGGCACCGCGCCGCGACCCCTTCGACGCTGCCAGGGGCGCCGA
TTTCGATCATGTCTACAGCGGGGTGGTGAACCTCAGCACCGAGAACATCTACTCTTTCAACTACACCAGC
CAGCCCGACCAGGTGACAGCCGTGAGGGTGTATGTGAACAGTTCCTCTGAGAATCTCAACTACCCGGTCC
TTGTTGTGGTTCGCCAGCAGAAAGAGGTGCTGTCCTGGCAGGTTCCTCTGCTCTTCCAAGGACTATACCA
GAGGAGCTACAACTATCAAGAAGTGAGCCGCACCTTATGTCCCTCAGAAGCAACCAATGAGACGGGACCC
TTGCAGCAACTGATATTTGTAGATGTCGCATCCATGGCACCCCTGGGTGCTCAGTACAAACTGCTAGTTA
CCAAGCTGAAGCACTTCCAGCTCCGGACAAATGTTGCCTTTCACTTTACTGCCAGCCCCTCTCAACCTCA
GTATTTTCTATACAAGTTTCCCAAAGACGTGGACTCAGTTATCATTAAAGTGGTGTCTGAAATGGCTTAT
CCATGTTCTGTTGTCTCAGTCCAGAATATCATGTGCCCGGTGTATGATCTCGACCACAATGTGGAATTTA
ATGGTGTCTATCAGTCCATGACCAAGAAAGCTGCCATCACGCTACAGAAGAAGGATTTTCCAGGCGAGCA
GTTCTTCGTGGTATTTGTGATAAAGCCTGAAGATTATGCCTGTGGAGGATCTTTCTTCATCCAGGAAAAG
GAAAACCAGACCTGGAATCTACAGCGAAAAAAGAACCTTGAAGTGACCATTGTCCCTTCCATTAAAGAAT
CTGTTTATGTGAAATCCAGTCTTTTCAGTGTCTTCATCTTCCTGTCCTTCTACTTGGGATGCCTTCTTGT
TGGGTTTGTTCATTATCTGAGGTTTCAGAGAAAATCCATTGATGGAAGCTTTGGGTCCAATGATGGCTCT
GGAAATATGGTGGCATCTCATCCCATTGCTGCCAGCACACCCGAAGGGAGCAATTATGGGACAATAGATG
AGTCAAGCTCCAGTCCTGGAAGGCAGATGTCCTCCTCCGATGGTGGGCCACCGGGCCAGTCAGACACAGA
CAGCTCCGTGGAGGAGAGCGACTTCGACACCATGCCAGACATTGAGAGTGATAAAAACATCATCCGGACC
AAGATGTTCCTTTACCTGTCAGATTTGTCCAGGAAGGACCGGAGAATTGTCAGCAAAAAATATAAAATTT
ATTTTTGGAACATCATCACCATTGCTGTGTTTTACGCGCTGCCCGTGATCCAGCTGGTCATTACCTATCA
GACAGTGGTAAATGTCACTGGCAACCAGGACATCTGTTACTACAACTTCCTCTGTGCTCACCCCTTGGGC
GTCCTGAGTGCCTTCAACAACATTCTCAGCAATCTGGGCCACGTGCTTCTGGGCTTCCTCTTCCTGCTGA
TAGTCTTGCGCCGCGACATCCTCCATCGGAGAGCCCTGGAAGCCAAGGACATCTTTGCTGTGGAGTACGG
GATTCCCAAACACTTTGGTCTCTTCTACGCTATGGGCATTGCATTGATGATGGAAGGGGTGCTCAGTGCT
TGCTACCATGTCTGCCCTAATTATTCCAACTTCCAATTCGACACCTCCTTCATGTACATGATCGCTGGCC
TGTGCATGCTGAAGCTCTATCAGACCCGCCACCCAGACATCAATGCCAGCGCCTACTCTGCCTATGCCTC
CTTTGCTGTGGTCATCATGGTCACCGTCCTTGGAGTGGTGTTTGGAAAAAATGACGTATGGTTCTGGGTC
ATCTTCTCTGCAATCCACGTTCTGGCCTCGCTAGCCCTCAGCACCCAGATATATTATATGGGTCGTTTCA
AGATAGATGTGTCTGACACAGATTTGGGAATTTTCCGGCGGGCTGCCATGGTGTTCTACACAGACTGTAT
CCAGCAGTGTAGCCGACCTCTATATATGGATAGAATGGTGTTGCTGGTTGTGGGGAATCTGGTTAACTGG
TCCTTCGCCCTCTTTGGATTGATATACCGCCCCAGGGACTTTGCTTCCTACATGCTGGGCATCTTCATCT
GTAACCTTTTGCTGTACCTGGCCTTTTACATCATCATGAAGCTCCGCAGCTCTGAAAAGGTCCTCCCAGT
CCCGCTCTTCTGCATCGTGGCCACCGCTGTGATGTGGGCTGCCGCCCTATATTTTTTCTTCCAGAATCTC
AGCAGCTGGGAGGGAACTCCGGCCGAATCCCGGGAGAAGAACCGCGAGTGCATTCTGCTGGATTTCTTCG
ATGACCATGACATCTGGCACTTCCTCTCTGCTACTGCTCTGTTTTTCTCATTCTTGGTTTTGTTAACTTT
GGATGATGACCTTGATGTGGTTCGGAGAGACCAGATCCCTGTCTTCTGA

Translation (832 aa):
MRGCLRLALLCALPWLLLAASPGHPAKSPRQPPAPRRDPFDAARGADFDHVYSGVVNLSTENIYSFNYTS
QPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSYNYQEVSRTLCPSEATNETGP
LQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFTASPSQPQYFLYKFPKDVDSVIIKVVSEMAY
PCSVVSVQNIMCPVYDLDHNVEFNGVYQSMTKKAAITLQKKDFPGEQFFVVFVIKPEDYACGGSFFIQEK
ENQTWNLQRKKNLEVTIVPSIKESVYVKSSLFSVFIFLSFYLGCLLVGFVHYLRFQRKSIDGSFGSNDGS
GNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSVEESDFDTMPDIESDKNIIRT
KMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLG
VLSAFNNILSNLGHVLLGFLFLLIVLRRDILHRRALEAKDIFAVEYGIPKHFGLFYAMGIALMMEGVLSA
CYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYSAYASFAVVIMVTVLGVVFGKNDVWFWV
IFSAIHVLASLALSTQIYYMGRFKIDVSDTDLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNW
SFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNL
SSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSFLVLLTLDDDLDVVRRDQIPVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH