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Report for CCDS7785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7785.1 Public Homo sapiens 11 EIF3F 24 110 108 CCDS HistoryNCBI Gene:8665Re-query CCDS DB by CCDS ID:7785.1Re-query CCDS DB by GeneID:8665See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7785.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533626.5 ENSP00000431800.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533626.5Link to Ensembl Protein Viewer:ENSP00000431800.1Re-query CCDS DB by Nucleotide ID:ENST00000533626Re-query CCDS DB by Protein ID:ENSP00000431800
Original member Current member EBI ENST00000651655.1 ENSP00000499218.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651655.1Link to Ensembl Protein Viewer:ENSP00000499218.1Re-query CCDS DB by Nucleotide ID:ENST00000651655Re-query CCDS DB by Protein ID:ENSP00000499218
Original member Current member NCBI NM_003754.3 NP_003745.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003754.3Link to Protein Sequence:NP_003745.1Re-query CCDS DB by Nucleotide ID:NM_003754Re-query CCDS DB by Protein ID:NP_003745Link to BLAST:NP_003745.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003745.1 357 O00303 357 100% 0 0

Chromosomal Locations for CCDS 7785.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 7987353 7987716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7991781 7991851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7992084 7992163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7992887 7993024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7994426 7994517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7994982 7995118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7995254 7995367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 7995945 7996022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGGCCACACCGGCGGTACCAGTAAGTGCTCCTCCGGCCACGCCAACCCCAGTCCCGGCGGCGGCCCCAG
CCTCAGTTCCAGCGCCAACGCCAGCACCGGCTGCGGCTCCGGTTCCCGCTGCGGCTCCAGCCTCATCCTC
AGACCCTGCGGCAGCAGCGGCTGCAACTGCGGCTCCTGGCCAGACCCCGGCCTCAGCGCAAGCTCCAGCG
CAGACCCCAGCGCCCGCTCTGCCTGGTCCTGCTCTTCCAGGGCCCTTCCCCGGCGGCCGCGTGGTCAGGC
TGCACCCAGTCATTTTGGCCTCCATTGTGGACAGCTACGAGAGACGCAACGAGGGTGCTGCCCGAGTTAT
CGGGACCCTGTTGGGAACTGTCGACAAACACTCAGTGGAGGTCACCAATTGCTTTTCAGTGCCGCACAAT
GAGTCAGAAGATGAAGTGGCTGTTGACATGGAATTTGCTAAGAATATGTATGAACTGCATAAAAAAGTTT
CTCCAAATGAGCTCATCCTGGGCTGGTACGCTACGGGCCATGACATCACAGAGCACTCTGTGCTGATCCA
CGAGTACTACAGCCGAGAGGCCCCCAACCCCATCCACCTCACTGTGGACACAAGTCTCCAGAACGGCCGC
ATGAGCATCAAAGCCTACGTCAGCACTTTAATGGGAGTCCCTGGGAGGACCATGGGAGTGATGTTCACGC
CTCTGACAGTGAAATACGCGTACTACGACACTGAACGCATCGGAGTTGACCTGATCATGAAGACCTGCTT
TAGCCCCAACAGAGTGATTGGACTCTCAAGTGACTTGCAGCAAGTAGGAGGGGCATCAGCTCGCATCCAG
GATGCCCTGAGTACAGTGTTGCAATATGCAGAGGATGTACTGTCTGGAAAGGTGTCAGCTGACAATACTG
TGGGCCGCTTCCTGATGAGCCTGGTTAACCAAGTACCGAAAATAGTTCCCGATGACTTTGAGACCATGCT
CAACAGCAACATCAATGACCTTTTGATGGTGACCTACCTGGCCAACCTCACACAGTCACAGATTGCACTC
AATGAAAAACTTGTAAACCTGTGA

Translation (357 aa):
MATPAVPVSAPPATPTPVPAAAPASVPAPTPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPA
QTPAPALPGPALPGPFPGGRVVRLHPVILASIVDSYERRNEGAARVIGTLLGTVDKHSVEVTNCFSVPHN
ESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGR
MSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQ
DALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIAL
NEKLVNL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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