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Report for CCDS78104.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78104.1 Public Homo sapiens 5 BTNL9 24 110 108 CCDS HistoryNCBI Gene:153579Re-query CCDS DB by CCDS ID:78104.1Re-query CCDS DB by GeneID:153579See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78104.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376841.6 ENSP00000366037.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376841.6Link to Ensembl Protein Viewer:ENSP00000366037.2Re-query CCDS DB by Nucleotide ID:ENST00000376841Re-query CCDS DB by Protein ID:ENSP00000366037
Original member Current member NCBI NM_001308245.2 NP_001295174.1 Accepted alive Link to Nucleotide Sequence:NM_001308245.2Link to Protein Sequence:NP_001295174.1Re-query CCDS DB by Nucleotide ID:NM_001308245Re-query CCDS DB by Protein ID:NP_001295174Link to BLAST:NP_001295174.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295174.1 344 Q6UXG8-3 344 100% 0 0

Chromosomal Locations for CCDS 78104.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 181045490 181045598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181047927 181048271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181050088 181050369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181053200 181053316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181053469 181053501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181054239 181054259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181055433 181055453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181055989 181056015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 181056538 181056617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGTGGACCTCTCAGTCTCCCCAGACTCCTTGAAGCCAGTATCGCTGACCAGCAGTCTTGTCTTCCTCA
TGCACCTCCTCCTCCTTCAGCCTGGGGAGCCGAGCTCAGAGGTCAAGGTGCTAGGCCCTGAGTATCCCAT
CCTGGCCCTCGTCGGGGAGGAGGTGGAGTTCCCGTGCCACCTATGGCCACAGCTGGATGCCCAGCAAATG
GAGATCCGCTGGTTCCGGAGTCAGACCTTCAATGTGGTACACCTGTACCAGGAGCAGCAGGAGCTCCCTG
GCAGGCAGATGCCGGCGTTCCGGAACAGGACCAAGTTGGTCAAGGACGACATCGCCTATGGCAGCGTGGT
CCTGCAGCTTCACAGCATCATCCCCTCTGACAAGGGCACATATGGCTGCCGCTTCCACTCCGACAACTTC
TCTGGCGAAGCTCTCTGGGAACTGGAGGTAGCAGGGCTGGGCTCAGACCCTCACCTCTCCCTTGAGGGCT
TCAAGGAAGGAGGCATTCAGCTGAGGCTCAGATCCAGTGGCTGGTACCCCAAGCCTAAGGTTCAGTGGAG
AGACCACCAGGGACAGTGCCTGCCTCCAGAGTTTGAAGCCATCGTCTGGGATGCCCAGGACCTGTTCAGT
CTGGAAACATCTGTGGTTGTCCGAGCGGGAGCCCTCAGCAATGTGTCCGTCTCCATCCAGAATCTCCTCT
TGAGCCAGAAGAAAGAGTTGGTGGTCCAGATAGCAGACGTGTTCGTACCCGGAGCCTCTGCGTGGAAGAG
CGCGTTCGTCGCGACCCTGCCGCTGCTGTTGGTCCTCGCGGCGCTGGCGCTGGGCGTCCTCCGGAAGCAG
CGGAGAAGCCGAGAAAAGCTGAGGAAGCAGGCGGAGAAGAGACAAGAGAAACTCACTGCAGAGCTGGAAA
AGCTTCAGACAGAGCTTGACTGGAGACGGGCTGAAGGCCAGGCTGAGTGCTTCGTTTTAGCCAGCCACCC
TCCTGGAGAAGGTATCCAGGCTGCCTCTAACTCCACAACAACACTGAATGCATAG

Translation (344 aa):
MVDLSVSPDSLKPVSLTSSLVFLMHLLLLQPGEPSSEVKVLGPEYPILALVGEEVEFPCHLWPQLDAQQM
EIRWFRSQTFNVVHLYQEQQELPGRQMPAFRNRTKLVKDDIAYGSVVLQLHSIIPSDKGTYGCRFHSDNF
SGEALWELEVAGLGSDPHLSLEGFKEGGIQLRLRSSGWYPKPKVQWRDHQGQCLPPEFEAIVWDAQDLFS
LETSVVVRAGALSNVSVSIQNLLLSQKKELVVQIADVFVPGASAWKSAFVATLPLLLVLAALALGVLRKQ
RRSREKLRKQAEKRQEKLTAELEKLQTELDWRRAEGQAECFVLASHPPGEGIQAASNSTTTLNA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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