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Report for CCDS78557.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78557.1 Public Mus musculus 1 Bend6 23 108 98 CCDS HistoryNCBI Gene:320705Re-query CCDS DB by CCDS ID:78557.1Re-query CCDS DB by GeneID:320705See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78557.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115161.7 ENSMUSP00000110814.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115161.7Link to Ensembl Protein Viewer:ENSMUSP00000110814.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115161Re-query CCDS DB by Protein ID:ENSMUSP00000110814
Original member Current member NCBI NM_001310484.1 NP_001297413.1 Accepted alive Link to Nucleotide Sequence:NM_001310484.1Link to Protein Sequence:NP_001297413.1Re-query CCDS DB by Nucleotide ID:NM_001310484Re-query CCDS DB by Protein ID:NP_001297413Link to BLAST:NP_001297413.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297413.1 219 Q6PFX2-3 219 100% 0 0

Chromosomal Locations for CCDS 78557.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 33853354 33853367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33862654 33862773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33863742 33863934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33864523 33864743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 33878260 33878371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (660 nt):
ATGGAACTGTCCAAGGAGGAACTTTGTAACAAAATCGAAAGCCTGAAAGAAAAACTAAGAAGCATCCGGA
AGGAAAACAGCCGGCTTCGACAGTCTTTGGTCATGCTGCAAGTGTTACCTCAGGCAGTCACACAGTTTGA
AGAACTGGTTGGAATGGCAGAGACCCTCCTTAAGAGTGGAGGAGCCGTGTCCACACCAGCGTCTACTCTC
TGGAGAGCAACAAACAACTCCTCCCCAGATTCGTTTGCCTCTCTGTGCAGTAATTCCAACTCTACTTCCA
GCTCCCCAAGTTCCGTGAAGGCTGAGGAAGAGCAGCATCCTGGTGAGAAGCAGTTCACGATTGAGAGATG
GCAGATTGCCCGTTGTAATAAGAGCAAGCCTCAGAAATTTATTAATGATTTAATGCAAGTACTTTACACG
AATGAGTACATGGCCACACACAGTCTGACGGGGGCAAAATCCTCCACTTCAAGGGACAAGGTTGTCAAAC
CAGCTATGAATCAGAATGAAGTTCAAGAAATCATAGGAGTAACGAAGCAGGTGTTTCCCAGTGCGGATGA
CGTCTCAATCAGACGGATGATAGGACAGAAGCTGAACAACTGCACGAAGAAGCCGAACGCGAGCAAAGCT
CCGAACTCTCAGGATGGTATCTTAAAATAA

Translation (219 aa):
MELSKEELCNKIESLKEKLRSIRKENSRLRQSLVMLQVLPQAVTQFEELVGMAETLLKSGGAVSTPASTL
WRATNNSSPDSFASLCSNSNSTSSSPSSVKAEEEQHPGEKQFTIERWQIARCNKSKPQKFINDLMQVLYT
NEYMATHSLTGAKSSTSRDKVVKPAMNQNEVQEIIGVTKQVFPSADDVSIRRMIGQKLNNCTKKPNASKA
PNSQDGILK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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