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Report for CCDS78590.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78590.1 Under review, update Mus musculus 1 Casp8 23 108 98 CCDS HistoryNCBI Gene:12370Re-query CCDS DB by CCDS ID:78590.1Re-query CCDS DB by GeneID:12370See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 78590.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000190213.1 ENSMUSP00000140335.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190213.1Link to Ensembl Protein Viewer:ENSMUSP00000140335.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190213Re-query CCDS DB by Protein ID:ENSMUSP00000140335
Original member Current member EBI ENSMUST00000191201.6 ENSMUSP00000140546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000191201.6Link to Ensembl Protein Viewer:ENSMUSP00000140546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000191201Re-query CCDS DB by Protein ID:ENSMUSP00000140546
Original member NCBI NM_001277926.1 NP_001264855.1 Updated not alive Link to Nucleotide Sequence:NM_001277926.1Link to Protein Sequence:NP_001264855.1Re-query CCDS DB by Nucleotide ID:NM_001277926Re-query CCDS DB by Protein ID:NP_001264855
Current member NCBI NM_001277926.2 NP_001264855.2 Pending alive Link to Nucleotide Sequence:NM_001277926.2Link to Protein Sequence:NP_001264855.2Re-query CCDS DB by Nucleotide ID:NM_001277926Re-query CCDS DB by Protein ID:NP_001264855Link to BLAST:NP_001264855.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264855.2 480 O89110 480 100% 0 0

Chromosomal Locations for CCDS 78590.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 58804083 58804114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58823915 58824247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58827207 58827312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58828873 58829011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58829096 58829149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58831606 58831667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58833633 58833774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58844344 58844845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 58846622 58846754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1503 nt):
ATGTGTGTGCTTTTGGAACTACTGAGTGACTGGTTACAGCTCTTCTACCTCTTGATAAGAATGGATTTCC
AGAGTTGTCTTTATGCTATTGCTGAAGAACTGGGCAGTGAAGACCTGGCTGCCCTCAAGTTCCTGTGCTT
GGACTACATCCCACACAAGAAGCAGGAGACCATCGAGGATGCCCAGAAGCTATTTCTGAGGCTGCGGGAA
AAGGGGATGTTGGAGGAAGGCAATCTGTCTTTCCTGAAAGAGCTGCTTTTCCACATCAGTCGGTGGGACC
TGCTGGTCAACTTCCTAGACTGCAACCGAGAGGAGATGGTGAGAGAGCTGCGGGATCCAGACAATGCCCA
GATTTCTCCCTACAGGGTCATGCTCTTTAAGCTCTCAGAAGAAGTGAGCGAGTTGGAATTGAGATCTTTT
AAGTTCCTTTTGAACAATGAGATCCCCAAATGTAAGCTGGAAGATGACTTGAGCCTGCTTGAAATTTTTG
TAGAAATGGAGAAGAGGACCATGCTGGCAGAAAATAACTTGGAAACCCTAAAATCAATCTGTGACCAGGT
CAACAAGAGCCTGCTGGGGAAGATCGAGGATTATGAAAGATCAAGCACAGAGAGAAGAATGAGCCTTGAA
GGAAGGGAAGAGTTGCCACCTTCAGTTTTGGATGAGATGAGCCTCAAAATGGCGGAACTGTGTGACTCGC
CAAGAGAACAAGACAGTGAGTCACGGACTTCAGACAAAGTTTACCAAATGAAGAACAAACCTCGGGGATA
CTGTCTGATCATCAACAATCATGATTTCAGCAAGGCCCGGGAAGACATAACCCAACTCCGAAAAATGAAG
GACAGAAAAGGAACAGACTGTGATAAAGAGGCTCTGAGTAAGACCTTTAAGGAGCTTCATTTTGAGATAG
TATCTTACGACGACTGCACTGCAAATGAAATCCACGAGATTCTAGAAGGCTACCAAAGCGCAGACCACAA
GAACAAAGACTGCTTCATCTGCTGTATCCTATCCCACGGTGACAAGGGTGTCGTCTATGGAACGGATGGG
AAGGAGGCCTCCATCTATGACCTGACATCTTACTTCACTGGTTCAAAGTGCCCTTCCCTGTCTGGGAAAC
CCAAGATCTTTTTCATTCAGGCTTGCCAAGGAAGTAACTTCCAGAAAGGAGTGCCTGATGAGGCAGGCTT
CGAGCAACAGAACCACACTTTAGAAGTGGATTCATCATCTCACAAGAACTATATTCCGGATGAGGCAGAC
TTTCTGCTGGGAATGGCTACGGTGAAGAACTGCGTTTCCTACCGAGATCCTGTGAATGGAACCTGGTATA
TTCAGTCACTTTGCCAGAGCCTGAGGGAAAGATGTCCTCAAGGAGATGACATTCTTAGCATCCTGACTGG
CGTGAACTATGACGTGAGCAATAAAGACGACAGGAGGAACAAGGGAAAGCAGATGCCACAGCCCACCTTC
ACACTACGGAAGAAGCTCTTCTTCCCTCCCTAA

Translation (500 aa):
MCVLLELLSDWLQLFYLLIRMDFQSCLYAIAEELGSEDLAALKFLCLDYIPHKKQETIEDAQKLFLRLRE
KGMLEEGNLSFLKELLFHISRWDLLVNFLDCNREEMVRELRDPDNAQISPYRVMLFKLSEEVSELELRSF
KFLLNNEIPKCKLEDDLSLLEIFVEMEKRTMLAENNLETLKSICDQVNKSLLGKIEDYERSSTERRMSLE
GREELPPSVLDEMSLKMAELCDSPREQDSESRTSDKVYQMKNKPRGYCLIINNHDFSKAREDITQLRKMK
DRKGTDCDKEALSKTFKELHFEIVSYDDCTANEIHEILEGYQSADHKNKDCFICCILSHGDKGVVYGTDG
KEASIYDLTSYFTGSKCPSLSGKPKIFFIQACQGSNFQKGVPDEAGFEQQNHTLEVDSSSHKNYIPDEAD
FLLGMATVKNCVSYRDPVNGTWYIQSLCQSLRERCPQGDDILSILTGVNYDVSNKDDRRNKGKQMPQPTF
TLRKKLFFPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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