NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS78713.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78713.1 Public Mus musculus 1 Qsox1 23 108 98 CCDS HistoryNCBI Gene:104009Re-query CCDS DB by CCDS ID:78713.1Re-query CCDS DB by GeneID:104009See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78713.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194632.1 ENSMUSP00000142301.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194632.1Link to Ensembl Protein Viewer:ENSMUSP00000142301.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194632Re-query CCDS DB by Protein ID:ENSMUSP00000142301
Original member Current member NCBI NM_023268.2 NP_075757.1 Accepted alive Link to Nucleotide Sequence:NM_023268.2Link to Protein Sequence:NP_075757.1Re-query CCDS DB by Nucleotide ID:NM_023268Re-query CCDS DB by Protein ID:NP_075757Link to BLAST:NP_075757.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075757.1 568 Q8BND5-3 568 100% 0 0

Chromosomal Locations for CCDS 78713.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155778843 155778851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155779718 155779938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155781275 155781454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155782525 155782672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155783403 155783525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155786794 155786923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155789298 155789432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155790981 155791126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155792194 155792284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155794546 155794648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155795351 155795396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155803697 155803797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155812526 155812799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGAGGAGGTGCGGCCGCCTCTCGGGGCCGCCATCGCTGCTGCTACTACTGCTGCTGCTCTCGCCTCTGC
TCTTCTCGGGGCCCGGCGCTTACGCGGCCCGGCTCTCAGTGCTCTACTCGTCCTCTGACCCGCTGACGCT
GCTGGATGCTGATTCGGTGCGTCCCACTGTGCTCGGCTCCAGCAGCGCCTGGGCGGTGGAGTTCTTCGCC
TCCTGGTGTGGCCACTGCATCGCCTTCGCCCCGACGTGGAAGGAGCTTGCTAACGACGTGAAAGACTGGA
GGCCAGCACTCAATCTTGCTGTCCTGGACTGTGCTGAGGAGACCAACAGTGCTGTCTGCAGAGAGTTCAA
CATCGCTGGCTTCCCGACTGTGAGGTTTTTTCAGGCCTTTACCAAGAACGGTTCTGGAGCGACACTGCCA
GGTGCTGGCGCTAATGTGCAGACTCTGCGTATGAGGCTCATCGATGCTCTGGAGTCCCACCGTGACACAT
GGCCCCCAGCCTGTCCACCTCTGGAACCTGCCAAGCTGAATGATATCGACGGATTCTTTACAAGAAATAA
AGCAGATTACCTGGCCCTGGTCTTTGAAAGGGAAGACTCCTACCTGGGTAGAGAGGTAACTCTGGACCTG
TCCCAGTACCATGCTGTGGCAGTGCGCAGGGTCTTGAATACAGAGAGTGACCTGGTGAACAAGTTTGGCG
TCACTGACTTCCCATCTTGTTACCTGCTGCTTCGGAATGGCTCTGTCTCCCGAGTGCCTGTGCTGGTGGA
GTCCAGGTCTTTCTATACATCCTATCTTCGGGGGCTACCTGGACTGACCAGGGATGCTCCCCCAACCACA
GCCACCCCAGTCACTGCTGATAAGATAGCACCCACAGTGTGGAAGTTTGCAGACCGCTCCAAGATCTACA
TGGCCGACCTGGAGTCCGCACTCCACTACATCTTGCGTGTAGAAGTGGGGAAGTTCTCAGTGCTGGAGGG
ACAGCGCCTGGTGGCCCTGAAAAAGTTTGTGGCAGTATTGGCCAAGTACTTCCCTGGGCAGCCTTTGGTC
CAGAACTTCTTGCATTCCATAAACGACTGGCTTCAGAAGCAGCAGAAGAAGAGGATCCCCTACAGTTTCT
TCAAAGCTGCTCTGGACAGCAGGAAGGAGGATGCTGTCCTTACTGAGAAGGTGAACTGGGTCGGCTGCCA
GGGCAGTGAGCCACACTTCCGGGGGTTTCCCTGCTCACTGTGGGTCCTCTTCCACTTCCTGACGGTGCAG
GCAAACCGATATAGTGAGGCCCACCCACAGGAACCAGCTGATGGCCAGGAGGTCCTCCAAGCCATGAGGA
GCTATGTTCAGTTCTTCTTTGGCTGTCGTGACTGTGCGGACCATTTTGAGCAGATGGCTGCAGCGTCCAT
GCACCAAGTGAGAAGTCCCAGTAATGCGATTCTTTGGCTCTGGACTAGCCACAACAGGGTTAACGCTCGC
CTCTCAGGTGCTCTGAGTGAGGACCCCCACTTCCCCAAGGTGCAGTGGCCTCCCCGTGAGCTGTGTTCTG
CCTGCCATAATGAACTCAACGGACAGGTGCCTTTGTGGGACCTTGGTGCCACCCTCAACTTTCTCAAGGC
TCACTTCTCCCCAGCAAACATCGTCATAGACTCTTCTGCATCTAGACACACAGGCCGGAGAGGGAGTCCA
GAAGCTACCCCCGAGCTGCTCTTGTGA

Translation (568 aa):
MRRCGRLSGPPSLLLLLLLLSPLLFSGPGAYAARLSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFA
SWCGHCIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLP
GAGANVQTLRMRLIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDL
SQYHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGLTRDAPPTT
ATPVTADKIAPTVWKFADRSKIYMADLESALHYILRVEVGKFSVLEGQRLVALKKFVAVLAKYFPGQPLV
QNFLHSINDWLQKQQKKRIPYSFFKAALDSRKEDAVLTEKVNWVGCQGSEPHFRGFPCSLWVLFHFLTVQ
ANRYSEAHPQEPADGQEVLQAMRSYVQFFFGCRDCADHFEQMAAASMHQVRSPSNAILWLWTSHNRVNAR
LSGALSEDPHFPKVQWPPRELCSACHNELNGQVPLWDLGATLNFLKAHFSPANIVIDSSASRHTGRRGSP
EATPELLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH