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Report for CCDS7872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7872.1 Public Homo sapiens 11 DCDC1 24 110 108 CCDS HistoryNCBI Gene:341019Re-query CCDS DB by CCDS ID:7872.1Re-query CCDS DB by GeneID:341019See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7872.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452803.1 ENSP00000389792.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000452803.1Link to Ensembl Protein Viewer:ENSP00000389792.1Re-query CCDS DB by Nucleotide ID:ENST00000452803Re-query CCDS DB by Protein ID:ENSP00000389792
Original member Current member NCBI NM_181807.4 NP_861523.2 Accepted alive Link to Nucleotide Sequence:NM_181807.4Link to Protein Sequence:NP_861523.2Re-query CCDS DB by Nucleotide ID:NM_181807Re-query CCDS DB by Protein ID:NP_861523Link to BLAST:NP_861523.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_861523.2 354 M0R2J8-3 354 100% 0 0

Chromosomal Locations for CCDS 7872.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 31263063 31263073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31265507 31265600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31290647 31290852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31305615 31305777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31306232 31306388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31307639 31307908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 31328117 31328280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGGCAAAAACAGGAGCAGAAGATCACAGAGAAGCACTATCTCAGTCTTCCTTATCCCTCTTGACTGAAG
CAATGGAAGTATTACAGCAAAGTAGCCCTGAAGGCACTTTGGATGGGAATACTGTAAACCCAATTTACAA
ATATATTTTGAATGATTTACCAAGAGAGTTTATGTCATCCCAGGCAAAAGCAGTTATTAAAACTACTGAT
GATTATTTGCAGTCTCAGTTTGGCCCCAACAGACTCGTGCATTCAGCAGCAGTATCAGAAGGGTCAGGAC
TTCAAGATTGCTCCACACATCAAACAGCATCAGATCACAGCCATGATGAAATATCAGACCTAGATAGCTA
CAAATCAAACAGTAAAAACAATTCTTGTTCTATATCAGCATCCAAGAGAAACAGACCTGTCAGTGCTCCA
GTGGGTCAACTGAGGGTTGCAGAGTTCTCTTCTTTAAAATTTCAGTCAGCCCGGAATTGGCAGAAATTGT
CTCAAAGACACAAACTTCAACCAAGAGTGATTAAAGTAACAGCTTACAAAAATGGATCTAGAACAGTCTT
TGCCAGAGTTACTGTACCAACCATCACCTTGCTGCTGGAGGAGTGCACAGAAAAGCTGAATCTGAACATG
GCCGCAAGACGAGTGTTCTTGGCAGACGGCAAGGAAGCCCTCGAACCTGAAGATATACCCCATGAAGCCG
ATGTTTATGTTTCAACGGGAGAGCCCTTTTTAAATCCATTCAAAAAAATTAAAGACCATCTGTTGTTAAT
TAAGAAAGTAACTTGGACAATGAATGGGTTGATGCTTCCTACTGATATCAAAAGACGGAAAACCAAGCCT
GTTCTTTCTATTAGAATGAAGAAACTTACTGAGAGGACCTCAGTCCGAATTCTGTTCTTTAAGAATGGCA
TGGGGCAGGATGGGCATGAGATTACAGTGGGAAAAGAAACAATGAAAAAGGTTTTAGATACTTGTACAAT
AAGAATGAATCTAAATTTACCAGCCAGATATTTTTATGATTTGTATGGCAGAAAAATTGAAGATATTTCA
AAAGGAAAGCACTGA

Translation (354 aa):
MAKTGAEDHREALSQSSLSLLTEAMEVLQQSSPEGTLDGNTVNPIYKYILNDLPREFMSSQAKAVIKTTD
DYLQSQFGPNRLVHSAAVSEGSGLQDCSTHQTASDHSHDEISDLDSYKSNSKNNSCSISASKRNRPVSAP
VGQLRVAEFSSLKFQSARNWQKLSQRHKLQPRVIKVTAYKNGSRTVFARVTVPTITLLLEECTEKLNLNM
AARRVFLADGKEALEPEDIPHEADVYVSTGEPFLNPFKKIKDHLLLIKKVTWTMNGLMLPTDIKRRKTKP
VLSIRMKKLTERTSVRILFFKNGMGQDGHEITVGKETMKKVLDTCTIRMNLNLPARYFYDLYGRKIEDIS
KGKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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