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Report for CCDS78798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78798.1 Public Mus musculus 10 Bclaf1 23 108 98 CCDS HistoryNCBI Gene:72567Re-query CCDS DB by CCDS ID:78798.1Re-query CCDS DB by GeneID:72567See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000185800.6 ENSMUSP00000140623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000185800.6Link to Ensembl Protein Viewer:ENSMUSP00000140623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000185800Re-query CCDS DB by Protein ID:ENSMUSP00000140623
Original member Current member NCBI NM_153787.2 NP_722482.1 Accepted alive Link to Nucleotide Sequence:NM_153787.2Link to Protein Sequence:NP_722482.1Re-query CCDS DB by Nucleotide ID:NM_153787Re-query CCDS DB by Protein ID:NP_722482Link to BLAST:NP_722482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722482.1 917 Q8K019-2 917 100% 0 0

Chromosomal Locations for CCDS 78798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 20322013 20322116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20322969 20323868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20325140 20325805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20325930 20326099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20328102 20328207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20329310 20329394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20332086 20332261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20333392 20333572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20334499 20334645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20339709 20339921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 20340052 20340057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2754 nt):
ATGGGCCGCTCCAATTCTAGATCACATTCTTCAAGATCCAAGTCTAGATCACAGTCTAGTTCTAGATCAA
GATCAAGATCACATTCTAGAAAGAAGAGATACAGGTCTCGTTCCAGAACATATTCGAGGTCTCGTAGTAG
AGATCGTATTTATTCTAGAGATTATCGTCGAGATTACAGGAATAATAGAGGAATGAGACGACCTTATGGG
TACAGAGGAAGGGGTAGAGGGTATTATCAAGGAGGAGGAGGGAGATACCATCGAGGTGGCTATAGACCTG
TCTGGAATAGAAGGCACTCTAGGAGTCCTAGACGAGGTCGGTCACGGTCCAGGAGTCCAAAAAGAAGATC
CGTGTCTTCTCAAAGATCCCGAAGCAGATCTCGCCGGTCATATAGATCCTCTAGGTCTCCAAGATCATCA
TCATCTCGCTCTTCATCCCCATATAGCAAATCTCCTGTCTCTAAAAGACGAGGGTCTCAGGAAAAACAAA
CCAAAAAAGCTGAGGGGGAACCCCAAGAAGAGAGTCCTTTGAAAAGCAAATCACAGGAGGAACCAAAGGA
TACTTTTGAACATGATCCATCTGAATCTATTGATGAGTTTAATAAATCTGCTACTTCTGGTGATATTTGG
CCTGGCCTTTCAGCTTATGATAATAGTCCAAGGTCACCTCATAGTCCTTCACCTATTGCTACACCACCCA
GTCAGAGTTCATCATGCTCAGATGCCCCCATGCTTAGTACAGTGCACTCTGCCAAAAATACCCCTTCTCA
GCATTCACATTCCATTCAGCACAGTCCTGAGAGGTCTGGATCTGGCTCTGTTGGAAATGGGTCGAGTCGA
TATAGTCCTTCTCAGAATAGTCCGATTCATCACATCCCATCACGAAGAAGCCCTGCCAAGACAATCACAC
CACAGAATGCTCCAAGAGAGGAATCTAGGGGGCGGTCCTCCTTTTATCCTGAAGGAGATCAGGAAACAGC
AAAGACAGGAAAGTTTTTAAAAAGGTTCACAGATGAAGAGTCTAGAGTATTCCTGCTTGATAGGGGTAAT
ATCAGGGATAAAGAGGCTCCGAAGGAGAAAGGGTCAGAGAAAGGCAGGGCAGATGGAGATTGGGATGACC
AGGAAGTTCTAGATTACTTTAGTGATAAAGAGTCTGCAAAACAAAAATTCCATGACTCTGAAGGGGATGA
CACAGAGGAGACAGAGGATTATAGACAGTTTAGGAAATCAGTCCTAGCAGATCAGGGCAAGAGCTTTGCT
ACTTCATCTCACCGGAATACTGAGGAGGAAGGACCCAAGTACAAGTCCAAAGTTTCATTAAAAGGCAATA
GAGAAAGTGATGGATTTAGAGAAGAAAAAAATTATAAACTGAAAGAGACTGCATACATAGTCGAAAGGCC
TAGCACTGCAAAGGACAAGCACAAGGAAGAAGACAAAGGCTCTGATAGAATAACAGTGAAGAAAGAAGTG
CAGTCACCGGAGCAGGTAAAGTCTGAAAAGCTCAAAGAGCTCTTTGATTACAGTCCCCCTCTACACAAGA
GTCTGGATGCACGAGAAAAGTCCATCTTCAGAGAGGAGAGCCCACTGAGGATCAAAATGATAGCCAGTGA
TTCTCACCGTCCTGAAGTCAAACTCAAAATGGCACCTGTTCCTCTTGACGATTCCAACAGACCTGCCTCC
TTGACTAAAGACAGGCTACTTGCTAGCACGCTTGTCCATTCTGTCAAGAAAGAGCAAGAATTCCGATCCA
TCTTTGACCACATTAAGCTGCCTCAGGCCAACAAAAGCACTTCAGAATCATTTATACAACACATTGTATC
CTTGGTTCATCATGTGAAAGAACAATACTTCAAATCACCTGCAGTGACCCTAAACGAGCGGTTCACTTCA
TACCAGAAAGCTACTGAAGAACATAGTACCCGGCAAAAGAGCCCCGAGATACACAGGAGGATTGACATCT
CTCCCAGCGCTCTGAGGAAGCACACCCGGCTAGCAGGAGAGGAGAGAGGTTTTAAAGAAGAAATTCAGAA
GGGAGATAAAAAGTTAAGGTGTGATTCGGCTGACCTTCGGCACGACATTGACCGTCGCCGTAAAGAGAGA
AGTAAAGAGCGGGGAGATTCCAAGGGCTCCAGGGAGTCCAGTGGGTCCAGAAAGCAAGAAAAAACACCAA
AGGATTACAAGGAGTATAAACCTTACAAAGATGACAGCAAACATAAAGGTAGAGAGCGGGACCATTCCCG
GTCATCGTCCTCGTCAGCATCGCCGTCCTCGCCCAGTTCTCGAGAAGAAAAAGAGAGTAAGAAAGAGAGA
GAAGAAGAATTTAAAACTCACCACGAGATGAAAGACTACTCAGGATTTGCAGGAGTTAGCAGACCACGAG
GAACCTTTTTTCGAATTAGAGGCAGAGGAAGAGCCAGAGGAGTTTTTGCTGGGACAAATACTGGTCCAAA
CAACTCAAATACCACTTTTCAAAAGAGACCGAAGGAAGAGGAATGGGATCCAGAATATACCCCAAAGAGC
AAGAAGTACTTCTTGCACGATGACAGAGATGATGGTGTGGATTACTGGGCCAAAAGAGGAAGAGGTCGTG
GTACTTTTCAACGTGGCAGAGGGCGCTTTAATTTCAAAAAATCAGGTAGCAGTCCAAAATGGACTCATGA
CAAATACCAAGGAGATGGGATTGTTGAAGATGACGAAGAGACCATGGAAAATAATGAAGAGAAGAAGGAC
AGACGCAAAGAAGAAAAGGAATAG

Translation (917 aa):
MGRSNSRSHSSRSKSRSQSSSRSRSRSHSRKKRYRSRSRTYSRSRSRDRIYSRDYRRDYRNNRGMRRPYG
YRGRGRGYYQGGGGRYHRGGYRPVWNRRHSRSPRRGRSRSRSPKRRSVSSQRSRSRSRRSYRSSRSPRSS
SSRSSSPYSKSPVSKRRGSQEKQTKKAEGEPQEESPLKSKSQEEPKDTFEHDPSESIDEFNKSATSGDIW
PGLSAYDNSPRSPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPERSGSGSVGNGSSR
YSPSQNSPIHHIPSRRSPAKTITPQNAPREESRGRSSFYPEGDQETAKTGKFLKRFTDEESRVFLLDRGN
IRDKEAPKEKGSEKGRADGDWDDQEVLDYFSDKESAKQKFHDSEGDDTEETEDYRQFRKSVLADQGKSFA
TSSHRNTEEEGPKYKSKVSLKGNRESDGFREEKNYKLKETAYIVERPSTAKDKHKEEDKGSDRITVKKEV
QSPEQVKSEKLKELFDYSPPLHKSLDAREKSIFREESPLRIKMIASDSHRPEVKLKMAPVPLDDSNRPAS
LTKDRLLASTLVHSVKKEQEFRSIFDHIKLPQANKSTSESFIQHIVSLVHHVKEQYFKSPAVTLNERFTS
YQKATEEHSTRQKSPEIHRRIDISPSALRKHTRLAGEERGFKEEIQKGDKKLRCDSADLRHDIDRRRKER
SKERGDSKGSRESSGSRKQEKTPKDYKEYKPYKDDSKHKGRERDHSRSSSSSASPSSPSSREEKESKKER
EEEFKTHHEMKDYSGFAGVSRPRGTFFRIRGRGRARGVFAGTNTGPNNSNTTFQKRPKEEEWDPEYTPKS
KKYFLHDDRDDGVDYWAKRGRGRGTFQRGRGRFNFKKSGSSPKWTHDKYQGDGIVEDDEETMENNEEKKD
RRKEEKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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