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Report for CCDS78886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78886.1 Public Mus musculus 10 Vezt 23 108 98 CCDS HistoryNCBI Gene:215008Re-query CCDS DB by CCDS ID:78886.1Re-query CCDS DB by GeneID:215008See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118077.7 ENSMUSP00000113983.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118077.7Link to Ensembl Protein Viewer:ENSMUSP00000113983.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118077Re-query CCDS DB by Protein ID:ENSMUSP00000113983
Original member Current member NCBI NM_001304572.1 NP_001291501.1 Accepted alive Link to Nucleotide Sequence:NM_001304572.1Link to Protein Sequence:NP_001291501.1Re-query CCDS DB by Nucleotide ID:NM_001304572Re-query CCDS DB by Protein ID:NP_001291501Link to BLAST:NP_001291501.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291501.1 617 Q3ZK22-3 617 100% 0 0

Chromosomal Locations for CCDS 78886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 93971685 93971707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93973835 93974042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93974445 93974545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93980314 93980507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93984162 93984493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93990140 93990287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93993517 93993654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 93996838 93997113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94000351 94000523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94003993 94004082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94006960 94007094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 94035670 94035705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1854 nt):
ATGACACCGGAGTTTGACGAAGAGGTGGTTTTTGAGAATTCTCCACTTTACCAGTACCTACAGGATTTGG
GACACACAGATTTTGAGATATGTTCTTCTTCGTCACCAAAACCAGAAAAATGCTTGACAACAGAGGGACC
TCAGCCGCCTCCCACCAGAGTCCTACAGAGACAAGGCATCCTGTTGAAACTGACAGAAACCATCAAGAGC
TGGACGTTTTCCTCTCAGCACAGTAAGAAAGATGACTTACTCCATAAGTTGGACACCGGGTTTCGGCTGG
ACTCACTGCATACCATCCTGCAGCAGGAAGTCCTGCTGCAAGAGGATGTGGAGCTGCTCGAGCTGCTTGA
CGCCAGCATCCTGTCTGCGGGGCAGCCTCAACAGGAAAGTGGACACCTTCCAACGCTCTGCTCCCTGGCA
ACCCCGAACACTTGGGATGTCTCGCTGCTGTTTGCCTTCATTAGTTTGCTCATCATGTTTCCCACGTGCT
GGATTGTGTCCTCCTGGCTGGTGTGGGGAATAATTCTATTTCTTTACTTGATCATACGAGTTTTGAAATT
ATGGAGGACAGCCAAACTGCAAATGACTCTGAAAAAATATAGGGTACGTTTGGAAGACATGGCAGCCAAT
AGCCGAGCCTTCACCAACCTTGTGAGAAAATCACTGCGTCTCATCCAAGAAACTGAAGTCATTTCCAGGG
GATTTACTCTGGTCAGTGCTGCTTGCTCATTTAATAAGGCTGCACAGCATCCCGGCCAGCATCTCATCGG
CCTTCGGAAAGCCGTCTACAGGACCGTAAGAGCCAACTTTCAAGCCGCAAGGCTAGCTACCTTGTACATG
CTGAAAAACTACCCCCTGAACTCTGAGAGTGACAATGTCACCAACTACATCTGTGTGGTACCTTTTAAGG
AGCTGGGGCTTGGACTCAGTGAAGACCAGATCTCAGAAGAGGAAGCTCGTAACCTGACAGATGGCTTCAG
CCTGCCTGCCTTGAAGGTTTTGTTCCAGCTCTGGGTGGCACAGAGTTCAGAGTTCTTCAGACGCCTGGCC
CTGTTACTTTCTACAGCGAATTCGCCTTCAGGGCCCTTACTCACTGCTGCACTTCTGCCTCATCATATCC
TCTGTGACGTGACTCAAGGTCTACCTCATGCTCACTCTGCCTGCTTGGATGAGCTGAAGCGCAGCTATGA
GTTCTTCCGGTACTTTGAAACTCAGCACCAGTCAGTCCCCCAGCGCTTATCCAAGACTCCGCAGAAGTCG
AGGGAGCTGAGCAACGTCCACACAGCAGTCCGTAGCTTACAGCTCCATCTGAAAGCACTACTGAATGAAG
TAATAATTCTTGAAGATGAACTTGAAAAGCTCGTTTGTACTAAAGAAACACAAGAGCTGCTATCGGAGGC
TTATCCGATACTAGAGCAGAAATTAAAACTGATTGAACCACACGTTCAGGCCAGCAACAGTTGCTGGGAG
GAAGCCATTTCTCAAGTGGATAAACTGCTCCGGAGGAACACAGATAAAAAAGGCAAGCCTGGAGTAGCCT
GTGAGAACCCACACTGCACCGCGGAGCCCTTGGTGCGGCCAGCTCTACACATTGAGGACAGAGACCCCAT
CCCTGAGGAGCAGGAATTAGAAGCTTATGTGGATGACATAGACATAGAAAGTGAGTTCCGAAAGGACGAT
TTCTATCACTTGTCTCAGGAAGACAGAGAGAGACAGAAGCGCGAGCAGGAGGAGTCCAGGCGGGTGCTGC
AGGAGCTGAAGTCTGTGCTGGGATTTAAGGCTTCCGAGGCTGAGAGGCAGAAGTGGAAGCAGCTGCTGTT
CAGTGACCACGGGGTAAAGGCCGAGTGGAATTAG

Translation (617 aa):
MTPEFDEEVVFENSPLYQYLQDLGHTDFEICSSSSPKPEKCLTTEGPQPPPTRVLQRQGILLKLTETIKS
WTFSSQHSKKDDLLHKLDTGFRLDSLHTILQQEVLLQEDVELLELLDASILSAGQPQQESGHLPTLCSLA
TPNTWDVSLLFAFISLLIMFPTCWIVSSWLVWGIILFLYLIIRVLKLWRTAKLQMTLKKYRVRLEDMAAN
SRAFTNLVRKSLRLIQETEVISRGFTLVSAACSFNKAAQHPGQHLIGLRKAVYRTVRANFQAARLATLYM
LKNYPLNSESDNVTNYICVVPFKELGLGLSEDQISEEEARNLTDGFSLPALKVLFQLWVAQSSEFFRRLA
LLLSTANSPSGPLLTAALLPHHILCDVTQGLPHAHSACLDELKRSYEFFRYFETQHQSVPQRLSKTPQKS
RELSNVHTAVRSLQLHLKALLNEVIILEDELEKLVCTKETQELLSEAYPILEQKLKLIEPHVQASNSCWE
EAISQVDKLLRRNTDKKGKPGVACENPHCTAEPLVRPALHIEDRDPIPEEQELEAYVDDIDIESEFRKDD
FYHLSQEDRERQKREQEESRRVLQELKSVLGFKASEAERQKWKQLLFSDHGVKAEWN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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