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Report for CCDS79188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79188.1 Public Mus musculus 13 Unc5a 23 108 98 CCDS HistoryNCBI Gene:107448Re-query CCDS DB by CCDS ID:79188.1Re-query CCDS DB by GeneID:107448See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109994.8 ENSMUSP00000105621.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109994.8Link to Ensembl Protein Viewer:ENSMUSP00000105621.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109994Re-query CCDS DB by Protein ID:ENSMUSP00000105621
Original member NCBI NM_001311128.1 NP_001298057.1 Updated not alive Link to Nucleotide Sequence:NM_001311128.1Link to Protein Sequence:NP_001298057.1Re-query CCDS DB by Nucleotide ID:NM_001311128Re-query CCDS DB by Protein ID:NP_001298057
Current member NCBI NM_001311128.2 NP_001298057.1 Accepted alive Link to Nucleotide Sequence:NM_001311128.2Link to Protein Sequence:NP_001298057.1Re-query CCDS DB by Nucleotide ID:NM_001311128Re-query CCDS DB by Protein ID:NP_001298057Link to BLAST:NP_001298057.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001298057.1 842 Q8K1S4-2 842 100% 0 0

Chromosomal Locations for CCDS 79188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 54949662 54949731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54990880 54991101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54995797 54995940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54996160 54996263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54996404 54996584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54997916 54998080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54999336 54999524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 54999622 54999924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55002466 55002553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55002833 55003001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55003183 55003416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55003542 55003691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55003778 55003942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55004478 55004656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55004806 55004971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2529 nt):
ATGGCCGTCCGGCCCGGCCTGTGGCCAGCGCTCCTGGGCATAGTCCTCACTGCCTGGCTTCGTGGTTCGG
GTGCCCAGCAGAGTGCCACAGTGGCCAACCCAGTGCCTGGTGCCAACCCGGACCTGCTGCCCCACTTCCT
GGTAGAGCCGGAGGACGTGTACATTGTCAAGAACAAGCCCGTGCTGCTGGTGTGCAAGGCTGTGCCCGCC
ACCCAGATCTTCTTCAAGTGCAACGGGGAATGGGTTCGCCAGGTCGATCACGTCATTGAACGCAGCACTG
ACGGCAGCAGCGGATTGCCAACCATGGAGGTCCGGATCAACGTATCAAGGCAGCAGGTCGAGAAAGTGTT
TGGGCTGGAGGAGTACTGGTGCCAGTGTGTGGCATGGAGCTCCTCAGGAACCACCAAAAGCCAGAAGGCC
TACATCCGGATTGCCTATTTGCGCAAGAACTTTGAGCAGGAGCCGCTGGCCAAGGAAGTGTCACTGGAGC
AAGGCATTGTGCTACCTTGTCGCCCCCCGGAAGGAATCCCCCCAGCTGAGGTGGAGTGGCTCCGAAATGA
GGACCTCGTGGACCCCTCCCTCGACCCCAATGTGTACATCACACGGGAGCACAGCCTAGTCGTGCGGCAG
GCCCGCCTGGCCGACACTGCCAACTACACCTGCGTGGCCAAGAACATCGTGGCCCGTCGCCGAAGCGCCT
CTGCGGCCGTCATTGTTTATGTGGATGGGAGCTGGAGCCCATGGAGTAAGTGGTCAGCCTGCGGGCTTGA
CTGCACCCACTGGCGGAGCCGGGAGTGCTCCGACCCAGCGCCCCGCAACGGAGGTGAGGAGTGCCGGGGT
GCTGACCTGGACACCCGCAACTGTACCAGTGACCTCTGCCTGCACACCTCTTCCGGCCCCGAGGACGTGG
CTCTCTACATCGGCCTCGTCGCCGTGGCCGTGTGCCTCATCTTGCTGCTGCTGGTCCTCGTCCTCATCTA
CTGCCGCAAGAAGGAAGGACTGGACTCAGACGTGGCTGACTCATCCATCCTTACCTCAGGCTTCCAGCCT
GTCAGCATCAAGCCCAGCAAAGCAGACAATCCCCATCTGCTCACCATCCAACCGGACCTCAGCACCACCA
CGACCACCTACCAGGGCAGCCTGTGTCCCCGGCAGGATGGACCCAGCCCCAAGTTCCAGCTCTCTAATGG
TCACCTGCTCAGCCCACTGGGCAGTGGCCGCCATACGCTGCACCACAGCTCCCCCACCTCTGAGGCTGAG
GACTTCGTCTCCCGCCTCTCCACCCAAAACTACTTTCGTTCTCTGCCCCGCGGTACCAGCAACATGGCCT
ATGGGACCTTCAACTTCCTCGGGGGCCGGCTGATGATCCCTAACACAGGAATCAGCCTCCTCATACCCCC
GGACGCCATCCCCCGAGGAAAGATCTACGAGATCTACCTCACTCTGCACAAGCCAGAAGACGTGAGGTTG
CCCCTAGCTGGCTGTCAGACCCTGCTGAGTCCTATCGTTAGCTGTGGGCCCCCAGGAGTCCTGCTCACCC
GGCCAGTCATCCTTGCCATGGACCACTGCGGGGAGCCCAGTCCCGACAGCTGGAGCCTGCGCCTCAAAAA
GCAGTCCTGTGAGGGCAGCTGGGAGGACGTGCTGCACCTTGGTGAGGAGTCGCCCTCTCATCTCTACTAC
TGCCAGCTGGAGGCCGGGGCCTGCTATGTCTTCACCGAGCAGCTAGGCCGCTTTGCCCTGGTGGGAGAGG
CCCTCAGCGTGGCTGCCACCAAGCGCCTCAGGCTCCTTCTGTTTGCCCCTGTGGCCTGTACGTCCCTCGA
GTACAACATCCGAGTGTACTGCCTGCACGACACCCACGATGCTCTCAAGGAGGTGGTGCAGCTGGAGAAG
CAGCTGGGTGGACAGCTGATCCAGGAGCCCCGTGTCCTGCACTTCAAAGACAGTTACCACAACCTACGTC
TGTCCATCCACGACGTGCCCAGCTCCCTGTGGAAGAGCAAGCTCCTTGTCAGCTACCAGGAGATCCCTTT
TTACCACATCTGGAATGGCACTCAGCAGTATCTGCACTGCACCTTCACCCTGGAGCGCGTCAATGCCAGC
ACCAGCGACCTGGCCTGCAAGGTGTGGGTGTGGCAGGTGGAGGGAGATGGACAGAGCTTCAACATCAACT
TTAACATCACTAAGGACACGAGGTTTGCTGAAATGCTGGCTCTGGAGAGTGAAGGGGGGGTCCCAGCCCT
GGTGGGCCCCAGTGCCTTCAAGATCCCCTTCCTCATTCGGCAAAAGATCATTACCAGCCTGGACCCACCC
TGCAGCCGGGGCGCCGACTGGCGAACTCTAGCCCAGAAACTTCACCTGGACAGCCATCTTAGCTTCTTTG
CCTCCAAGCCCAGCCCTACAGCCATGATCCTCAACCTATGGGAGGCGCGGCACTTCCCCAACGGCAACCT
CGGCCAGCTGGCCGCAGCTGTGGCCGGACTGGGCCAGCCAGATGCTGGCCTCTTCACCGTGTCAGAGGCC
GAGTGCTGA

Translation (842 aa):
MAVRPGLWPALLGIVLTAWLRGSGAQQSATVANPVPGANPDLLPHFLVEPEDVYIVKNKPVLLVCKAVPA
TQIFFKCNGEWVRQVDHVIERSTDGSSGLPTMEVRINVSRQQVEKVFGLEEYWCQCVAWSSSGTTKSQKA
YIRIAYLRKNFEQEPLAKEVSLEQGIVLPCRPPEGIPPAEVEWLRNEDLVDPSLDPNVYITREHSLVVRQ
ARLADTANYTCVAKNIVARRRSASAAVIVYVDGSWSPWSKWSACGLDCTHWRSRECSDPAPRNGGEECRG
ADLDTRNCTSDLCLHTSSGPEDVALYIGLVAVAVCLILLLLVLVLIYCRKKEGLDSDVADSSILTSGFQP
VSIKPSKADNPHLLTIQPDLSTTTTTYQGSLCPRQDGPSPKFQLSNGHLLSPLGSGRHTLHHSSPTSEAE
DFVSRLSTQNYFRSLPRGTSNMAYGTFNFLGGRLMIPNTGISLLIPPDAIPRGKIYEIYLTLHKPEDVRL
PLAGCQTLLSPIVSCGPPGVLLTRPVILAMDHCGEPSPDSWSLRLKKQSCEGSWEDVLHLGEESPSHLYY
CQLEAGACYVFTEQLGRFALVGEALSVAATKRLRLLLFAPVACTSLEYNIRVYCLHDTHDALKEVVQLEK
QLGGQLIQEPRVLHFKDSYHNLRLSIHDVPSSLWKSKLLVSYQEIPFYHIWNGTQQYLHCTFTLERVNAS
TSDLACKVWVWQVEGDGQSFNINFNITKDTRFAEMLALESEGGVPALVGPSAFKIPFLIRQKIITSLDPP
CSRGADWRTLAQKLHLDSHLSFFASKPSPTAMILNLWEARHFPNGNLGQLAAAVAGLGQPDAGLFTVSEA
EC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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