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Report for CCDS79234.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79234.1 Public Mus musculus 13 Erbin 23 108 98 CCDS HistoryNCBI Gene:59079Re-query CCDS DB by CCDS ID:79234.1Re-query CCDS DB by GeneID:59079See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79234.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169083.7 ENSMUSP00000127607.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169083.7Link to Ensembl Protein Viewer:ENSMUSP00000127607.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169083Re-query CCDS DB by Protein ID:ENSMUSP00000127607
Original member Current member NCBI NM_001289475.1 NP_001276404.1 Accepted alive Link to Nucleotide Sequence:NM_001289475.1Link to Protein Sequence:NP_001276404.1Re-query CCDS DB by Nucleotide ID:NM_001289475Re-query CCDS DB by Protein ID:NP_001276404Link to BLAST:NP_001276404.1

Chromosomal Locations for CCDS 79234.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 103820699 103820806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103822811 103822885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103823314 103823406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103824720 103824926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103830188 103830331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103833498 103835028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103839307 103839490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103841154 103841268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103843457 103843633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103844814 103844987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103845504 103845625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103850745 103850844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103854819 103854888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103856995 103857110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103857411 103857540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103857851 103857923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103859376 103859520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103860071 103860145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103862280 103862343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103866649 103866705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103868043 103868132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103868820 103868898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103884143 103884260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 103886141 103886329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4236 nt):
ATGACTACAAAACGAAGTTTGTTTGTGCGGTTGGTACCATGTCGCTGTCTACGAGGAGAAGAGGAGACAG
TCACTACTCTAGATTATTCTCATTGCAGCTTGGAACAAGTTCCCAAAGAGATTTTCACCTTTGAAAAAAC
TTTAGAGGAGCTCTATTTAGATGCTAATCAGATTGAAGAGCTTCCAAAGCAACTTTTTAATTGTCAGTCT
CTACATAAACTAAGTTTGCCAGACAATGATTTAACAACATTACCAGCCTCCATTGCAAATCTTATTAATC
TCAGGGAACTGGATGTCAGCAAAAATGGAATACAAGAATTTCCAGAAAATATTAAAAATTGTAAAGTTTT
GACAATTGTGGAGGCTAGTGTGAACCCTATTTCTAAGCTCCCTGATGGGTTTTCTCAGCTGCTAAACCTA
ACCCAGTTATATCTGAATGATGCTTTCCTTGAATTCTTACCAGCTAATTTTGGCAGATTAACTAAACTCC
AGATTCTAGAACTTAGAGAAAACCAGTTGAAAATGTTGCCTAAAACCATGAATAGACTGACCCAGCTGGA
AAGGCTGGATTTGGGAAGTAATGAATTCACAGAAGTGCCTGAAGTACTTGAACAACTAAGTGGATTGAGA
GAGTTTTGGATGGATGGCAATAGACTGACTTTTATTCCAGGGTTTATTGGTAGTTTGAGACAGCTCACGT
ACTTGGATGTTTCTAAAAATAATATTGAAATGGTTGAAGAAGGAATTTCAACATGTGAAAACCTCCAGGA
CTTTCTCTTATCAAGTAATTCCCTTCAGCAGCTGCCGGAAACTATTGGTTCATTGAAAAATGTCACAACT
CTAAAAATTGATGAAAACCAATTAATGTATCTACCAGACTCAATAGGAGGGTTAAGGTCAATAGAAGAAC
TGGATTGCAGTTTCAATGAAATTGAAGCTTTGCCTTCCTCAATTGGCCAGCTCACAAACATGAGAACATT
TGCTGCAGATCACAATTACTTACAACAGCTACCCCCAGAGATTGGAAACTGGAAAAATATAACTGTGCTG
TTTCTCCATTGTAATAAACTAGAGACGCTTCCAGAGGAAATGGGTGATATGCAAAAATTAAAAGTCATCA
ATTTAAGTGATAATAGGTTAAAGAATTTGCCTTTTAGCTTTACAAAGCTACAACAGTTGACTGCTATGTG
GCTGTCAGATAATCAGTCCAAACCTCTGATACCTCTTCAAAAAGAAACAGACACAGAGACTCAGAAAATG
GTGCTTACTAATTACATGTTCCCTCAGCAGCCACGGACTGAAGACGTTATGTTCATATCAGATAATGAAA
GTTTTAATCCTGCATTGTGGGAAGAACAGAGAAAACAGCGGGCTCAAGTGGCATTTGAATGTGATGAAGA
CAAAGATGAAAGAGAGGCACCACCCAGGGAGGGAAACTTAAAGAGATATCCAACACCATACCCAGATGAG
CTTAAGAATATGGTCAAGACTGTTCAAACCATTGTACATAGATTAAAAGATGAAGAGACTAATGAAGAGT
CTGGGAGAGATTTGAAGCAGCATGAAGATCAGCAAGTTGTAAATAAGGATAAGTGTGTGAAGACTTCAGA
AAGTACTACAACAAAAAGCAAACTTGATGAAAGAGAAAAGTATATGAATTCTGTACAGAAAATGAGTGAG
CCTGAAGCTGAGACCAATGGTGGAAATTTGCCAGTAACTGCAAGTATGAAGTTGTCTGGAAACCTGAAGC
ATATTGTTAACCATGATGATGTTTTTGAGGAATCTGAAGAACTTTCTTCTGATGAAGAAATGAAAATGGC
AGAGATGCGACCTCCATTAATTGAATCCTCGATTAATCAGCCCAAAGTTGTAGCACTTAGTAATAATAAA
AAGGATGATGCGAAGGATGCAGACTCTTTATCCGATGAAGTCACACACAACAGTAATCAGAATAACAGCA
ACTGTTCTTCTCCGTCCCGAATGTCTGATTCAGTGTCTCTTAATACTGACAGCAGTCAAGACACGTCACT
CTGTTCTCCCGTGAAACAGACTCCCGTGGATAGTAACTCCAAAGTCAGACAAGAAGATGAAAATTTTAAC
AGCCTTTTACAAAATGGAGTTAATTTAAACAATTCACCAGAGGAAAAATTCAAAATTAATGATAAAAAGG
ATTTTAAGTTACCTGAGTATGATTTGAATATTGAAGAACAGTTAGTTCTGATTGAAAAAGACATTGATTC
AAAAGCCACATCTGATGACTCTCGCCAGTTAGACCATATCAACATGAATATTAATAAACTTGTGACCAAT
AATATTTTTCAACCAGAAGTAATGGAAAGATCAAAGATGCAGGATATAGTACTTGGAACAGGCTTTTTAA
GTATTCATCCTAAAAATGAGGCTGAGCACATAGAAAATGGGGCTAAGTTTCCGAATTTGGAGTCCATAAA
TAAGGTAAATGGTCTTTGTGAGGACACTGCACCGTCTCCTGGTAGGGTTGAACCACAGAAGGCCAGTTCT
TCTGCTGACGTGGGCATTTCTAAAAGCACGGAAGATCTATCTCCTCAGAGAAGTGGTCCAACTGGAGCTG
TTGTGAAATCTCATAGTATAACTAACATGGAGACTGGAGGTTTAAAAATCTATGACATTCTTGGTGATGA
TGGCCCTCAGCCGCCAAGTGCAGCAGTTAAAATCGCATCTGCTGTGGATGGGAAGAACATAGTCAGAAGC
AAGTCTGCCACACTGCTGTATGATCAGCCCCTGCAGGTGTTCACTGCTGCCTCCTCATCTTCTGAGTTAC
TGTCAGGTACAAAGGCAGTTTTCAAGTTTGATTCAAATCACAACCCTGAAGAGCCAGATATAATAAGAGC
TGCCACAGTATCTGGCCCACAGTCTACACCTCACCTGTATGGTCCCCCACAATATAATGTCCAGTACAGT
GGCAGTGCTACAGTGAAAGACACCTTGTGGCACCCTAAACAGAATCCACAAATAGATCCTGTCAGTTTTC
CTCCTCAGCGCCTTCCAAGATCTGAGAGTGCAGAAAATCACAGTTATGCAAAGCATTCTGCCAACATGAA
TTTCTCTAACCATAACAATGTTAGAGCCAATACTGGATACCACTTACAACAGAGACTTGCCCCAGCCAGG
CATGGAGAAATGTGGGCTATCTCCCCGAATGACCGACTAGTGCCAGCAGTCACTCGGACTACTATTCAGA
GACAGAGTAGCGTGTCTTCAACGGCTTCTGTAAATCTCGGTGACCCCACAAGGCGTACTGAAGGAGATTA
CTTATCGTACAGAGAGTTACATTCAATGGGAAGAACTCCAGTCATGTCAGGATCACAGAGACCTCTTTCT
GCACGAGCGTACAGCATCGATGGCCCAAATACATCCAGGCCTCAGAGTGCCCGTCCCTCTATTAATGAAA
TACCAGAGAGAACTATGTCAGTTAGTGATTTCAATTACTCACGGACTAGTCCTTCAAAAAGACCAAATAC
AAGGGTCGGGTCTGAACATTCTCTGTTAGATCCTCCAGGAAAAAGCAAGGTTCCTCATGACTGGCGGGAA
CAAGTACTACGACACATTGAGGCCAAAAAGTTAGAAAAGAGTATGCTGTCAAGGTCCTTTAATTCCAATC
TTACTGCTGTAAGCAGTTCTCACTATGGCAGCTCTAGGGATCTGCATGGCAGCCAGGGCAGCCTTGCCCT
GAGTGTTGCAGACGGAAGAGGTTCTGGTGGGCACATTTTTCGAATGCCTTTGAGTAATGGACAAATGGGC
CAGCCTCTCAGGCCTCAGGCACATTATAGTCAAACCCATCACCCCCCTCAGGCATCTGTGGCAAGGCATC
CCTCTAGAGAACAACTAATTGATTATTTGATGCTGAAAGTGGCCCACCAGCCTCCATATACACATCCCCA
TTGTTCTCCTAGACAAGGCCATGAACTGGCAAAGCAAGAGATTCGAGTAAGAGTAGAAAAGGATCCAGAA
CTTGGATTTAGCATATCAGGAGGTGTCGGCGGCAGAGGAAACCCTTTCAGACCTGATGATGATGGTATAT
TTGTAACAAGGGTACAACCTGAAGGACCAGCATCAAAATTACTACAGCCAGGAGATAAAATTATTCAGGC
TAATGGCTACAGTTTTATCAACATTGAACATGGGCAAGCGGTGTCCTTGTTAAAAACTTTCCATAATGCA
GTAGATCTCATCATTGTACGAGAAGTTTCTTCATAA

Translation (1411 aa):
MTTKRSLFVRLVPCRCLRGEEETVTTLDYSHCSLEQVPKEIFTFEKTLEELYLDANQIEELPKQLFNCQS
LHKLSLPDNDLTTLPASIANLINLRELDVSKNGIQEFPENIKNCKVLTIVEASVNPISKLPDGFSQLLNL
TQLYLNDAFLEFLPANFGRLTKLQILELRENQLKMLPKTMNRLTQLERLDLGSNEFTEVPEVLEQLSGLR
EFWMDGNRLTFIPGFIGSLRQLTYLDVSKNNIEMVEEGISTCENLQDFLLSSNSLQQLPETIGSLKNVTT
LKIDENQLMYLPDSIGGLRSIEELDCSFNEIEALPSSIGQLTNMRTFAADHNYLQQLPPEIGNWKNITVL
FLHCNKLETLPEEMGDMQKLKVINLSDNRLKNLPFSFTKLQQLTAMWLSDNQSKPLIPLQKETDTETQKM
VLTNYMFPQQPRTEDVMFISDNESFNPALWEEQRKQRAQVAFECDEDKDEREAPPREGNLKRYPTPYPDE
LKNMVKTVQTIVHRLKDEETNEESGRDLKQHEDQQVVNKDKCVKTSESTTTKSKLDEREKYMNSVQKMSE
PEAETNGGNLPVTASMKLSGNLKHIVNHDDVFEESEELSSDEEMKMAEMRPPLIESSINQPKVVALSNNK
KDDAKDADSLSDEVTHNSNQNNSNCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTPVDSNSKVRQEDENFN
SLLQNGVNLNNSPEEKFKINDKKDFKLPEYDLNIEEQLVLIEKDIDSKATSDDSRQLDHINMNINKLVTN
NIFQPEVMERSKMQDIVLGTGFLSIHPKNEAEHIENGAKFPNLESINKVNGLCEDTAPSPGRVEPQKASS
SADVGISKSTEDLSPQRSGPTGAVVKSHSITNMETGGLKIYDILGDDGPQPPSAAVKIASAVDGKNIVRS
KSATLLYDQPLQVFTAASSSSELLSGTKAVFKFDSNHNPEEPDIIRAATVSGPQSTPHLYGPPQYNVQYS
GSATVKDTLWHPKQNPQIDPVSFPPQRLPRSESAENHSYAKHSANMNFSNHNNVRANTGYHLQQRLAPAR
HGEMWAISPNDRLVPAVTRTTIQRQSSVSSTASVNLGDPTRRTEGDYLSYRELHSMGRTPVMSGSQRPLS
ARAYSIDGPNTSRPQSARPSINEIPERTMSVSDFNYSRTSPSKRPNTRVGSEHSLLDPPGKSKVPHDWRE
QVLRHIEAKKLEKSMLSRSFNSNLTAVSSSHYGSSRDLHGSQGSLALSVADGRGSGGHIFRMPLSNGQMG
QPLRPQAHYSQTHHPPQASVARHPSREQLIDYLMLKVAHQPPYTHPHCSPRQGHELAKQEIRVRVEKDPE
LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFHNA
VDLIIVREVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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