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Report for CCDS79268.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79268.1 Public Mus musculus 14 Synpo2l 23 108 98 CCDS HistoryNCBI Gene:68760Re-query CCDS DB by CCDS ID:79268.1Re-query CCDS DB by GeneID:68760See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79268.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119483.1 ENSMUSP00000112760.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119483.1Link to Ensembl Protein Viewer:ENSMUSP00000112760.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119483Re-query CCDS DB by Protein ID:ENSMUSP00000112760
Original member Current member NCBI NM_001310432.1 NP_001297361.1 Accepted alive Link to Nucleotide Sequence:NM_001310432.1Link to Protein Sequence:NP_001297361.1Re-query CCDS DB by Nucleotide ID:NM_001310432Re-query CCDS DB by Protein ID:NP_001297361Link to BLAST:NP_001297361.1

Chromosomal Locations for CCDS 79268.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20660301 20662465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20664397 20664481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGGAGACCACCATCCAAGAGCCCCTCGGCCAAGCCAGCTGTGACAAAGCCCCAGCTCCTGAGCTCCAAG
ACCCGTTCTATGCAGAACTGCAACGCGCAGAAAGCCTCCAGGAGAAAAGCGTAAAGGAGGCAAGAACCAA
ATGCCGGACCATTGCATCCCTGCTAACAGCAGCCCCCAACCCTCACTCCAAGGGGGTGCTTATGTTTAAG
AAGCGGCGGCAGAGAGCCAAGAAGTACACCCTAGTGAGTTTTGGGGCCGCAGCTGGGACAGGAACAGAGG
AGGAGGACGGCATCCCCCCAACGAGTGAGTCGGAGCTGGACGAGGAGACCTTCTCAGACGCCCGCAGCCT
TACTAATCAATCCGACTGGGACAGCCCCTATCTAGACATGGAGCTGGCTAGGGCTGGCTTAGGCACAGCA
GAGAGTCAGAACTCTGGACTGGGAGGGCAGCTAAGTGAGGTCTCTGGGCGAGGGGTCCAGCTCTTTGAAC
AGCAGCGCCAGCGGGTAGCCTCCAGCTCCCAGGAGCTGGCTCAGGTGGGCCCAGCAGCTATGCTTAATGG
GCAGAGTCTGCAGTCCCCACCTCGAGCACAGAGTGCTCCCCCAGAGGCAGCTGTGCTCCCACTCAGCCCT
TTGTCGGTCCCTGCAGTCAGCCCTACCCCCTTCTTCCCGGATGGTGGAGCCCCCATCCCTGCACCAAGTA
TCTTTAACAGGTCAGCGAGGCCTTTTACCCCAGGTTTACAAGGGCAAAGGTCAGGTACCACCTCAGTGAT
TTTCCGGCCCTTGGCCCCTAAGAAGGTGAATGAAGGCTTGGGGAGCACTAGCCCCGCCCCGTCCCCCTTC
GCAGCCCCTCCACAGGGGCCCACCCCTCTGCCCAGCTTCACCACAGTGGTTCCCAGCCACACGCCGGTCT
CTGGGGCTTCTAGCAGCACCCAACGCTCCTCTGGTCCTGTGACCGCTACCAGTTCCTTGTACATCCCAGC
CCCAAGCCGGCCTGTTACACCAGGAGGCGCCCCAGAACCGCCCACTCCTCCTAGCGCTGCTGCCATGACC
TCCACCGCTTCCATCTTCTTGTCCACTCCACTAAGAAACTCTGCGCGCCCGGAGGCGCCGGGCCCCGCGG
TCCCCGAGCCTGCCAGCGTTCGGGAGCAGCGCATCTCTGTGCCGGCTGCCCGCACCGGCATCCTGCAGGA
GGCTAGGCGCCGGGGCACCCGCAAGCAGATGTTCCGGCCTGGGAAGGAAGAGACGAAGAACTCGCCCAAC
CCGGAGCTGCTGTCACTAGTGCAGAACCTGGATGAAAAACCTCGGGCGGGCGGTGCGGAATCTGGTCCGG
AGGAGGACGCTTTAAGCCTCGGGGCTGAAGCCTGTAACTTCATGCAGCCACTAGGGGGCAGGAGTTACAA
GACCTTGCCTCAAGTATCACCGAAAACCCCGCCTCCAATGGCTCCCAAAACTCCACCCCCTACAACGCCT
AAGACTCCACCTCCCGTGGCTCCTAAACCTGGGTCGCGAGGGCTCCTTGATGGGCTAGTGAATGGATCGA
CCCCGATGGTGGGAATCCCTGAGCCGCCAAGGCTGCAAGGGAGGGGCGGGGAGCTATTTGCCAAACGGCA
GAGCCGTGCCGATAGGTACGTGGTGGAAGCTACATCTGGCTCTAGCCTTAATCCAGGCCTTCGCCCTAGA
AGTCCTTCTCCCACACCCTCACTGCCCCCATCCTGGAAATACTCACCCAACATCCGTGCCCCACCTCCTA
TTGCTTACAACCCACTTCTCTCACCCTTTTTTCCCCAAGCTGCCCGAACTCTCCCCAATAAGGCTCAATC
CCAGGGGCCTCGGGTGACCCCTAAGCAGGGTATCAAGGCCCTGGATTTCATGCGACATCAGCCATACCAA
CTTAAAACGGCCATGTTTTGTTTTGATGAGGGTTCTTCAACTCCTGGCCCCACTTCAGGGCCTCCCAAAA
CTGCCCGAGTTCAGGAGATCCGCAGATTTTCCACTCCTGCACCCCAGCCCACTGCAGAGCCCTTGGCTCC
CACTGTGCTTGTCCCCAGAGCGGCTACCACCTTGGACGAACCCATTTGGAGGGCAGAGCTGGCCTCAACC
CCTGTCCCTAACCCAGACCATCAAGAGTCTCTCAGGAGCTTTGCTGCCGCTCCCAGTTCCTGTGGTTTCC
AAGTAGCCAGGCCCCGGTTCTCAGCCACCAGAACAGGGTTGCAGGCCCATGTCTGGAGGCCTGGGGCAGG
GCACCAGTGA

Translation (749 aa):
METTIQEPLGQASCDKAPAPELQDPFYAELQRAESLQEKSVKEARTKCRTIASLLTAAPNPHSKGVLMFK
KRRQRAKKYTLVSFGAAAGTGTEEEDGIPPTSESELDEETFSDARSLTNQSDWDSPYLDMELARAGLGTA
ESQNSGLGGQLSEVSGRGVQLFEQQRQRVASSSQELAQVGPAAMLNGQSLQSPPRAQSAPPEAAVLPLSP
LSVPAVSPTPFFPDGGAPIPAPSIFNRSARPFTPGLQGQRSGTTSVIFRPLAPKKVNEGLGSTSPAPSPF
AAPPQGPTPLPSFTTVVPSHTPVSGASSSTQRSSGPVTATSSLYIPAPSRPVTPGGAPEPPTPPSAAAMT
STASIFLSTPLRNSARPEAPGPAVPEPASVREQRISVPAARTGILQEARRRGTRKQMFRPGKEETKNSPN
PELLSLVQNLDEKPRAGGAESGPEEDALSLGAEACNFMQPLGGRSYKTLPQVSPKTPPPMAPKTPPPTTP
KTPPPVAPKPGSRGLLDGLVNGSTPMVGIPEPPRLQGRGGELFAKRQSRADRYVVEATSGSSLNPGLRPR
SPSPTPSLPPSWKYSPNIRAPPPIAYNPLLSPFFPQAARTLPNKAQSQGPRVTPKQGIKALDFMRHQPYQ
LKTAMFCFDEGSSTPGPTSGPPKTARVQEIRRFSTPAPQPTAEPLAPTVLVPRAATTLDEPIWRAELAST
PVPNPDHQESLRSFAAAPSSCGFQVARPRFSATRTGLQAHVWRPGAGHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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