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Report for CCDS79280.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79280.1 Public Mus musculus 14 Zmiz1 23 108 98 CCDS HistoryNCBI Gene:328365Re-query CCDS DB by CCDS ID:79280.1Re-query CCDS DB by GeneID:328365See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79280.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007961.14 ENSMUSP00000007961.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007961.14Link to Ensembl Protein Viewer:ENSMUSP00000007961.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007961Re-query CCDS DB by Protein ID:ENSMUSP00000007961
Original member Current member NCBI NM_001310666.1 NP_001297595.1 Accepted alive Link to Nucleotide Sequence:NM_001310666.1Link to Protein Sequence:NP_001297595.1Re-query CCDS DB by Nucleotide ID:NM_001310666Re-query CCDS DB by Protein ID:NP_001297595Link to BLAST:NP_001297595.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297595.1 1066 Q6P1E1-2 1066 100% 0 0

Chromosomal Locations for CCDS 79280.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 25572069 25572128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25576131 25576244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25581568 25581673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25635873 25636017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25643558 25643672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25644656 25644873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25645659 25645857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25646735 25647007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25649668 25649850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25650525 25650605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25651219 25651393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25651847 25651988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25653323 25653533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25654499 25654604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25655097 25655257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25656023 25656090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25656324 25656392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25656746 25656990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25658107 25658273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25661267 25661521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 25662940 25663047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3201 nt):
ATGAATTCTATGGACAGGCACATCCAGCAGACCAATGACCGTCTGCAGTGCATCAAGCAGCACTTACAGA
ACCCCGCCAACTTCCACAATGCTGCTACAGAGCTGCTGGATTGGTGTGGAGACCCTCGAGCCTTCCAGAG
GCCCTTTGAGCAGAGCCTCATGGGCTGCCTGACGGTTGTCAGCCGTGTGGCTGCCCAACAAGGGTTTGAC
CTGGACCTGGGCTACAGACTCTTGGCTGTGTGCGCCGCAAATCGAGACAAGTTCACCCCCAAGTCTGCTG
CCCTGCTGTCCTCCTGGTGTGAAGAACTTGGCCGCCTGCTGCTGCTGCGACATCAGAAGAGCCGCCAGAA
CGACCCCCCTGGGAAACTGCCCATGCAGCCCCCCCTCAGCTCCATGAGCTCCATGAAACCCACTCTGTCG
CACAGTGATGGGTCATTTCCTTATGACTCTGTCCCTTGGCAGCAGAACACCAATCAGCCTCCCGGCTCCC
TCTCCGTGGTCACCACGGTGTGGGGAGTGACCAACACATCCCAGAGTCAGGTCCTCGGGAACCCTATGGC
CAATGCCAACAACCCTATGAATCCAGGTGGCAACCCCATGGCATCAGGCATGAGCACCAGCAACCCCGGC
ATCAACTCCCCACAGTTCGCAGGGCAACAGCAACAGTTCTCCACCAAAGCTGGCCCTGCACAGCCCTATA
TCCAGCCCAACATGTACGGCCGACCTGGCTACCCTGGTAGCGGGGGCTTTGGGGCCAGTTACCCTGGGGG
TCCTAGTGCCCCAGCAGGCATGGGCATCCCTCCACATACTCGGCCTCCTGCTGACTTCACCCAGCCAGCG
GCCGCTGCTGCAGCAGCTGCAGTAGCAGCCGCCGCTGCCACAGCCACAGCCACAGCCACAGCTACAGTGG
CAGCCTTGCAAGAGACACAGAACAAGGATATAAACCAGTATGGACCGATGGGTCCCACCCAGGCGTATAA
CAGCCAATTCATGAACCAACCCGGGCCTCGGGGGCCTGCCTCCATGGGGGGCAGCCTGAACCCTGCCGGC
ATGGCAGCTGGCATGACACCCTCGGGCATGAGCGGCCCTCCCATGGGCATGAACCAGCCCCGACCACCCG
GCATCAGCCCCTTTGGCACACACGGGCAAAGGATGCCCCAGCAGACCTACCCAGGCCCCCGGCCCCAGTC
CCTTCCTATTCAGAGCATAAAGAGGCCATACCCGGGAGAGCCCAACTATGGAAACCAGCAATATGGACCA
AACAGCCAGTTCCCCACCCAGCCAGGCCAGTACCCTACCCCTAACCCCCCAAGGCCACTCACATCTCCCA
ACTACCCTGGACAAAGGATGCCGAGCCAACCCAGCACCGGACAGTACCCACCCCCCACAGTCAACATGGG
GCAGTATTACAAGCCAGAACAGTTTAATGGACAGAACAACACCTTCTCCTCCGGAAGCAGCTACAGCAGC
TACAGCCAAGGGAGCGTCAACAGGCCTCCCAGGCCGGTTCCTGTGGCGAATTACCCCCACTCACCTGTTC
CAGGGAACCCCACTCCCCCCATGACGCCCGGGAGCAGCATACCTCCCTATCTGTCCCCCAGCCAAGATGT
CAAACCACCTTTCCCACCTGATATCAAGCCAAATATGAGTGCTCTGCCACCACCCCCAGCCAACCACAAT
GACGAGCTACGGCTCACATTCCCCGTGCGGGATGGCGTGGTTCTGGAGCCCTTCCGCCTGGAGCACAACC
TTGCCGTCAGCAACCACGTGTTCCACCTGCGGCCCACGGTTCATCAGACGCTGATGTGGAGGTCAGACCT
GGAGCTGCAGTTCAAGTGCTACCACCATGAAGATCGACAGATGAACACCAACTGGCCAGCCTCGGTTCAG
GTCAGCGTCAACGCCACACCCCTCACGATCGAGCGGGGAGACAACAAGACCTCCCACAAGCCCCTGCACC
TCAAGCATGTATGCCAGCCTGGCCGGAACACCATCCAGATCACTGTCACCGCCTGCTGCTGTTCCCACCT
CTTTGTGCTGCAGCTGGTACACCGGCCCTCTGTGCGCTCCGTGCTGCAGGGCCTCCTCAAGAAGCGCCTA
CTGCCCGCTGAGCACTGCATCACGAAAATCAAGCGGAATTTCAGCAGTGTGGCTGCCTCCTCGGGCAACA
CAACTCTCAATGGGGAGGATGGCGTGGAGCAGACCGCCATCAAGGTGTCTCTGAAGTGCCCCATCACATT
CCGGCGCATACAGCTGCCTGCTCGAGGCCACGATTGCAAGCATGTGCAGTGCTTTGACCTGGAGTCATAC
CTCCAACTGAATTGTGAGCGAGGGACCTGGAGGTGTCCCGTGTGCAATAAAACTGCTCTGCTCGAGGGTC
TGGAAGTGGATCAGTACATGTGGGGGATCCTGAACGCCATCCAACACTCCGAGTTTGAAGAGGTCACCAT
TGACCCCACGTGCAGCTGGCGGCCAGTACCCATCAAGTCAGACCTCCACATCAAGGATGACCCCGATGGC
ATCCCCTCAAAGCGGTTCAAAACCATGAGCCCCAGCCAGATGATCATGCCCAATGTCATGGAGATGATCG
CCGCTCTGGGCCCTGGCCCGTCTCCCTACCCCCTCCCACCTCCTCCTGGGGGCACCAGCTCCAACGACTA
CAGCAGCCAAGGAAACAACTACCAGGGTCATGGCAACTTTGACTTCCCCCATGGGAATCCCGGAGGGACA
TCCATGAACGACTTCATGCACGGTCCCCCCCAGCTCTCGCACCCACCGGACATGCCCAACAACATGGCCG
CCCTCGAGAAACCCCTCAGTCACCCCATGCAGGAAACTATGCCCCACGCTGGCAGTTCTGACCAGCCCCA
TCCCTCCATACAACAAGGTTTGCACGTACCACACCCCAGCAGCCAGGCAGGGCCTCCATTACATCACAGT
GGGGCTCCTCCTCCTTCCCAGCCTCCCCGGCAGCCACCACAGGCCGCTCCCGGCAACCATCCACACAGCG
ACCTGACCTTTAACCCCTCCTCAGCCTTAGAGGGTCAGGCCGGAGCACAGGGAGCATCCGACATGCCGGA
ACCTTCACTGGATCTACTGCCGGAACTCACAAACCCGGATGAGCTTCTTTCCTACCTGGACCCCCCCGAC
CTTCCAAGCAATAGCAACGATGACCTCCTGTCTCTCTTTGAGAACAACTGA

Translation (1066 aa):
MNSMDRHIQQTNDRLQCIKQHLQNPANFHNAATELLDWCGDPRAFQRPFEQSLMGCLTVVSRVAAQQGFD
LDLGYRLLAVCAANRDKFTPKSAALLSSWCEELGRLLLLRHQKSRQNDPPGKLPMQPPLSSMSSMKPTLS
HSDGSFPYDSVPWQQNTNQPPGSLSVVTTVWGVTNTSQSQVLGNPMANANNPMNPGGNPMASGMSTSNPG
INSPQFAGQQQQFSTKAGPAQPYIQPNMYGRPGYPGSGGFGASYPGGPSAPAGMGIPPHTRPPADFTQPA
AAAAAAAVAAAAATATATATATVAALQETQNKDINQYGPMGPTQAYNSQFMNQPGPRGPASMGGSLNPAG
MAAGMTPSGMSGPPMGMNQPRPPGISPFGTHGQRMPQQTYPGPRPQSLPIQSIKRPYPGEPNYGNQQYGP
NSQFPTQPGQYPTPNPPRPLTSPNYPGQRMPSQPSTGQYPPPTVNMGQYYKPEQFNGQNNTFSSGSSYSS
YSQGSVNRPPRPVPVANYPHSPVPGNPTPPMTPGSSIPPYLSPSQDVKPPFPPDIKPNMSALPPPPANHN
DELRLTFPVRDGVVLEPFRLEHNLAVSNHVFHLRPTVHQTLMWRSDLELQFKCYHHEDRQMNTNWPASVQ
VSVNATPLTIERGDNKTSHKPLHLKHVCQPGRNTIQITVTACCCSHLFVLQLVHRPSVRSVLQGLLKKRL
LPAEHCITKIKRNFSSVAASSGNTTLNGEDGVEQTAIKVSLKCPITFRRIQLPARGHDCKHVQCFDLESY
LQLNCERGTWRCPVCNKTALLEGLEVDQYMWGILNAIQHSEFEEVTIDPTCSWRPVPIKSDLHIKDDPDG
IPSKRFKTMSPSQMIMPNVMEMIAALGPGPSPYPLPPPPGGTSSNDYSSQGNNYQGHGNFDFPHGNPGGT
SMNDFMHGPPQLSHPPDMPNNMAALEKPLSHPMQETMPHAGSSDQPHPSIQQGLHVPHPSSQAGPPLHHS
GAPPPSQPPRQPPQAAPGNHPHSDLTFNPSSALEGQAGAQGASDMPEPSLDLLPELTNPDELLSYLDPPD
LPSNSNDDLLSLFENN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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