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Report for CCDS79345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79345.1 Public Mus musculus 14 Tsc22d1 23 108 98 CCDS HistoryNCBI Gene:21807Re-query CCDS DB by CCDS ID:79345.1Re-query CCDS DB by GeneID:21807See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000177207.1 ENSMUSP00000135296.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177207.1Link to Ensembl Protein Viewer:ENSMUSP00000135296.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177207Re-query CCDS DB by Protein ID:ENSMUSP00000135296
Original member Current member EBI ENSMUST00000142683.7 ENSMUSP00000135493.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000142683.7Link to Ensembl Protein Viewer:ENSMUSP00000135493.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000142683Re-query CCDS DB by Protein ID:ENSMUSP00000135493
Original member Current member EBI ENSMUST00000133224.1 ENSMUSP00000135561.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133224.1Link to Ensembl Protein Viewer:ENSMUSP00000135561.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133224Re-query CCDS DB by Protein ID:ENSMUSP00000135561
Original member Current member EBI ENSMUST00000140251.8 ENSMUSP00000135806.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140251.8Link to Ensembl Protein Viewer:ENSMUSP00000135806.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140251Re-query CCDS DB by Protein ID:ENSMUSP00000135806
Original member Current member NCBI NM_001310647.1 NP_001297576.1 Accepted alive Link to Nucleotide Sequence:NM_001310647.1Link to Protein Sequence:NP_001297576.1Re-query CCDS DB by Nucleotide ID:NM_001310647Re-query CCDS DB by Protein ID:NP_001297576Link to BLAST:NP_001297576.1

Chromosomal Locations for CCDS 79345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 76505295 76505297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76506417 76506674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (261 nt):
ATGGATCTGGTGAAAAGCCATTTGATGTATGCGGTGAGGGAGGAAGTGGAAGTTCTGAAGGAGCAGATCA
AAGAACTAATAGAGAAAAACTCCCAGCTGGAGCAGGAGAACAATCTGCTGAAGACGCTGGCCAGTCCGGA
GCAGCTCGCCCAGTTTCAGGCCCAGCTGCAGACTGGCTCCCCTCCGGCCACCACGCAGCCACAGGGGACC
ACACAGCCCCCTGCACAGCCAGCATCCCAGGGCTCAGGATCAACCGCATAG

Translation (86 aa):
MDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQGT
TQPPAQPASQGSGSTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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