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Report for CCDS79618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79618.1 Public Mus musculus 18 Pcdha6 23 108 98 CCDS HistoryNCBI Gene:12937Re-query CCDS DB by CCDS ID:79618.1Re-query CCDS DB by GeneID:12937See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 79618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000193777.5 ENSMUSP00000141587.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193777.5Link to Ensembl Protein Viewer:ENSMUSP00000141587.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193777Re-query CCDS DB by Protein ID:ENSMUSP00000141587
Original member Current member NCBI NM_007767.4 NP_031793.2 Accepted alive Link to Nucleotide Sequence:NM_007767.4Link to Protein Sequence:NP_031793.2Re-query CCDS DB by Nucleotide ID:NM_007767Re-query CCDS DB by Protein ID:NP_031793Link to BLAST:NP_031793.2

Chromosomal Locations for CCDS 79618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 36967756 36970137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37156155 37156213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37159265 37159353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37184946 37185256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2841 nt):
ATGGATTTTACCACTGAAGGCCGACTGGGAACACGGTGTATGCTGCTCTCGCTCCTGCTCCTCGCAGCCT
GGGAGGCAGGGAGCGGCCAGCTTCATTACTCCGTCCCAGAGGAGGCCAAACACGGCACCTTCGTGGGCCG
CATCGCGCAGGACCTGGGGCTGGAGCTGACGGAGCTGGTGCCCCGCCTGTTCAGGGTGGCGTCCAAGGAC
CGCGGGGACCTTCTGGAGGTAAATCTGCAGAATGGCATTTTGTTTGTGAATTCTCGGATCGACCGGGAGG
AGCTGTGCGGGCGGAGCGTGGAGTGTAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTT
CCACGTGGAGGTGGAGGTGAGGGACATTAATGATAACCCGCCTGTGTTCTCAGTAAAGGAGCAAAGAATG
TTAATTTACGAATCTAGGCTGCCAGATTCTTTGTTTCCACTAGAGGGCGCATCAGATGCTGATGTTGGAT
TAAATTCTATGTTAACCTATAAACTCAGTCCCAGCGAATACTTTGGGCTAGATGTGAAATCAAACAGCGA
TGGCAACAAACAAATTAGACTCTTGTTGAAAAAATCCTTGGACAGAGAGGATGCTCCTGAGCATAAGCTA
CTGCTGACAGCCACGGATGGAGGCAAACCTGAGCTCACAGGCTCTGTTCAGCTGCTGGTCACTGTGCTGG
ATGTGAATGATAACGCCCCTACTTTCCAGCACCCTGAGTATGAAGTGAGAATCTTGGAAAACTCAGACAA
CGGAACGACAGTTATTAGACTGAATGCTTCTGACAAGGATGAAGGGACGAATTCAGCAATTTCGTACTCT
TTTAATAGACTGGTGCCGCCCAAGACTCTTGAGCAGTTTAGCATAGATGCAGATACAGGAGAAATCATAA
CTCAAGGAAATTTGGACTTTGAGCAAGTAGATGTCTACAAAATCCACGTTGATGCGACGGACAAAGGACA
CCCTCCGATGGTGGGCCATTGCACTGTTTTAGTGAAGGTATTGGATGAGAACGACAATGTGCCTCAGATC
ACTTTGACTTCCTTATCCCTGCCTGTTCGAGAGGACGCTGCACTGAGTACTGTCATTGCTCTAATTAGCG
TTTCGGATCTGGACTCTGGATCCAACGGGCAGGTGACCTGCTCCCTGAGTCCTCATGTCCCCTTCAAGTT
GGTGTCCACCTTCAAGAATTACTATTCGCTTGTGTTGGACAGCGCCCTGGACCGAGAGACCACAGCTGAC
TATCAGGTGGTGGTGACAGCGCGGGACGGGGGTTCTCCTTCTTTGTGGACCACGGCTAGCGTGTCTGTGG
AGGTGGCCGATGTGAACGACAATGCGCCTTCATTTGCGCAGCCTGATTACACGGTGTTCGTGAAGGAGAA
CAACCCTCCTGGAGCGCACATCTTCACAGTATCGGCGATGGACGCGGATGCGCAGGAGAACGCGCTGGTG
TCCTACTCGCTGGTGGAGCGGAGGGTGGGCGAGCGCTTGCTGTCGAGCTATGTGTCTGTGCACGCGGAAA
GCGGCAAGGTGTTCGCTCTGCAGCCTCTGGACCATGAGGAGCTGGAACTGCTGCAGTTCCAGGTGAGCGC
GCGGGATGCTGGTGTGCCTGCCCTGGGCAGCAATGTGACTCTGCAGGTGTTTGTGCTGGATGAGAACGAC
AATGCGCCCACGCTGCTTGGACCTTGGACACCAGGATCTGGTGGTGTAGTGAGCGAACTTGTGTCACCTT
CAGTGGGTGCTGGCCAGGTGGTCACAAAGGTGCGTGCAGTAGATGCGGATTCTGGCTATAATGCCTGGCT
GTCTTATGAGCTGCATCCTTTAGCAGGTGGAACGCGGAGTCTGTTTAGGGTAGGTCTGTACACGGGCGAG
ATCAGTACCACGCGTGCCCTTGAGGAGGCAGATGCACCACGCCATCGCCTATTAGTGCTGGTGAAGGACC
ACGGGGAGCCAGCGCTGATTGCCACAGCCACTGTGTTAGTGTCTCTGGTTGAGAACAGCCAGACTCCAAA
AGCCTCTTCGCGAGCGCAAGGTGCCACTGGCCAGGAAGTTTCGTTAGTGAATGTCAACGTGTACCTGATC
ATTGCCATCTGTGCGGTGTCCAGCCTACTAGTTCTAACCCTCATGGTATACACCGCACTGCGGTGCTCAG
TTCCACCTACAGAGGGTGTGTGCGGGGCAGGGAAGCCTGTGCTGGTGTGCTCTAGTGCGGTAGGGAGCTG
GTCCTACTCACAGCAGAGGAGACAGAAGGTTTGTTCTGGAGAGGGACCACCCAAAACCGATCTCATGGCC
TTCAGCCCGAGTCTTCCTCCTTGTCCGGTTGTGGGTGAGCATCAGGATTTGAACGACGATCATTGCTCAA
GACCCCGGCAGCCCAACCCTGACTGGCGCTACTCTGCCTCGCTAAGAGCAGGCATGCACAGCTCTGTGCA
CCTGGAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTATCCAGT
GCAACACCAGAACCTGAGGCAGGAGAGGTGTCCCCTCCGGTGGGCGCCGGTGTCAACAGCAACAGCTGGA
CCTTTAAATACGGACCAGGCAACCCCAAACAGTCCGGTCCCGGTGAGTTGCCAGACAAATTCATTATCCC
AGGATCTCCTGCAATCATCTCCATCCGGCAGGAGCCTGCTAACAACCAAATTGACAAAAGCGATTTTATA
ACCTTCGGCAAAAAGGAGGAGACCAAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAA
AAGAGAAAGGGAACAGCACGACGGACAACAGTGACCAGTGA

Translation (946 aa):
MDFTTEGRLGTRCMLLSLLLLAAWEAGSGQLHYSVPEEAKHGTFVGRIAQDLGLELTELVPRLFRVASKD
RGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVEVEVRDINDNPPVFSVKEQRM
LIYESRLPDSLFPLEGASDADVGLNSMLTYKLSPSEYFGLDVKSNSDGNKQIRLLLKKSLDREDAPEHKL
LLTATDGGKPELTGSVQLLVTVLDVNDNAPTFQHPEYEVRILENSDNGTTVIRLNASDKDEGTNSAISYS
FNRLVPPKTLEQFSIDADTGEIITQGNLDFEQVDVYKIHVDATDKGHPPMVGHCTVLVKVLDENDNVPQI
TLTSLSLPVREDAALSTVIALISVSDLDSGSNGQVTCSLSPHVPFKLVSTFKNYYSLVLDSALDRETTAD
YQVVVTARDGGSPSLWTTASVSVEVADVNDNAPSFAQPDYTVFVKENNPPGAHIFTVSAMDADAQENALV
SYSLVERRVGERLLSSYVSVHAESGKVFALQPLDHEELELLQFQVSARDAGVPALGSNVTLQVFVLDEND
NAPTLLGPWTPGSGGVVSELVSPSVGAGQVVTKVRAVDADSGYNAWLSYELHPLAGGTRSLFRVGLYTGE
ISTTRALEEADAPRHRLLVLVKDHGEPALIATATVLVSLVENSQTPKASSRAQGATGQEVSLVNVNVYLI
IAICAVSSLLVLTLMVYTALRCSVPPTEGVCGAGKPVLVCSSAVGSWSYSQQRRQKVCSGEGPPKTDLMA
FSPSLPPCPVVGEHQDLNDDHCSRPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTVSS
ATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQEPANNQIDKSDFI
TFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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