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Report for CCDS79663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79663.1 Public Mus musculus 18 Mro 23 108 98 CCDS HistoryNCBI Gene:71263Re-query CCDS DB by CCDS ID:79663.1Re-query CCDS DB by GeneID:71263See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79663.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120033.7 ENSMUSP00000113434.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120033.7Link to Ensembl Protein Viewer:ENSMUSP00000113434.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120033Re-query CCDS DB by Protein ID:ENSMUSP00000113434
Original member Current member EBI ENSMUST00000179472.7 ENSMUSP00000136775.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179472.7Link to Ensembl Protein Viewer:ENSMUSP00000136775.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179472Re-query CCDS DB by Protein ID:ENSMUSP00000136775
Original member NCBI NM_001305882.1 NP_001292811.1 Updated not alive Link to Nucleotide Sequence:NM_001305882.1Link to Protein Sequence:NP_001292811.1Re-query CCDS DB by Nucleotide ID:NM_001305882Re-query CCDS DB by Protein ID:NP_001292811
Current member NCBI NM_001305882.2 NP_001292811.1 Accepted alive Link to Nucleotide Sequence:NM_001305882.2Link to Protein Sequence:NP_001292811.1Re-query CCDS DB by Nucleotide ID:NM_001305882Re-query CCDS DB by Protein ID:NP_001292811Link to BLAST:NP_001292811.1

Chromosomal Locations for CCDS 79663.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 73869958 73870047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73871918 73872064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73873221 73873406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73876683 73876838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73877430 73877537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73877845 73877898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGGAACAGAAAATCTCGAACCAGCCCCTCCCCACCCCTACTTCCCAGTCCAAGAAGAGAAGAACACCAC
TGCTATCCTTCCTTTCCAAGGTCTCTTGGAAACTGAGGTTGCAGAAGCGGGAGCTTTTGAAGAATGCACT
TTTCGTCTTGGCAGAAAGAGCCCGGGATCCTAATGCTAAAAAGCGCCATCTAGCAATGAGAGGCCTGGGT
GCCCTGGCCCGTGAAGCTCCTGACAAGCAGGTGAGAAAGTATAAGAAAGTTATGCTTGACCTCCTGGTTC
GTGGGCTGTATGATCCTGTGAGTTCTGAAGTTATCCATGAGAGTGTGAAGACTCTGACCATCATGCTGGG
CAAGATCCAGGGCCATGGGCTGGGGTCCTTCTTCATAGACATCACCCTTCAGGCCCGGACCTTACTGGAT
GATGAGGACGACAGCGTGCGGTATTCAGCTTTTGTCCTCTTTGGGCAGTTGGCCTCGTTTGCTGGGTGGA
GGTGGAAGAAATTTTTCACTCAGCAAGTTAACCAGACCCAAGATTCGCTCTTAGGCCATTTGCAGGATGA
AAGTCCTAAGGTTGCCAAGGCTTGCAAAATGACTGTTCGAGCCTGTGTCCCGTATCTGAAACCCAGAAAG
GTGCCGAGTTTCCAAAGTGAAGAAGATCAGAAGAACCACAGGCTTTCCCGGCAGCTGAGCCACTGCCATC
CAGAGATCCTGCTGTTCTTCTATGCGAATAAAATCCTGTAA

Translation (246 aa):
MEQKISNQPLPTPTSQSKKRRTPLLSFLSKVSWKLRLQKRELLKNALFVLAERARDPNAKKRHLAMRGLG
ALAREAPDKQVRKYKKVMLDLLVRGLYDPVSSEVIHESVKTLTIMLGKIQGHGLGSFFIDITLQARTLLD
DEDDSVRYSAFVLFGQLASFAGWRWKKFFTQQVNQTQDSLLGHLQDESPKVAKACKMTVRACVPYLKPRK
VPSFQSEEDQKNHRLSRQLSHCHPEILLFFYANKIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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