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Report for CCDS79916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79916.1 Public Mus musculus 3 Mbnl1 23 108 98 CCDS HistoryNCBI Gene:56758Re-query CCDS DB by CCDS ID:79916.1Re-query CCDS DB by GeneID:56758See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000194069.5 ENSMUSP00000141474.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000194069.5Link to Ensembl Protein Viewer:ENSMUSP00000141474.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000194069Re-query CCDS DB by Protein ID:ENSMUSP00000141474
Original member Current member NCBI NM_001310514.1 NP_001297443.1 Accepted alive Link to Nucleotide Sequence:NM_001310514.1Link to Protein Sequence:NP_001297443.1Re-query CCDS DB by Nucleotide ID:NM_001310514Re-query CCDS DB by Protein ID:NP_001297443Link to BLAST:NP_001297443.1

Chromosomal Locations for CCDS 79916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 60529631 60529804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60595594 60595764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60603694 60603894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60613263 60613520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60614683 60614736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60615620 60615773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 60625124 60625155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGGCTGTTAGTGTCACACCAATTCGGGACACAAAATGGCTAACACTGGAAGTATGTAGAGAGTTTCAAA
GGGGGACTTGCTCACGACCAGACACGGAATGTAAATTTGCACATCCTTCGAAAAGCTGCCAAGTTGAAAA
TGGACGAGTAATCGCCTGCTTTGATTCACTGAAAGGTCGTTGCTCCAGAGAGAACTGCAAATATCTTCAT
CCACCCCCACACTTAAAAACACAGTTAGAGATAAATGGGCGGAATAACTTGATTCAGCAGAAGAACATGG
CCATGCTGGCCCAGCAAATGCAGTTAGCCAATGCCATGATGCCCGGTGCCCCGTTGCAGCCCGTGCCAAT
GTTTTCAGTTGCACCAAGCTTAGCCACCAGTGCATCAGCAGCCTTTAACCCTTACCTGGGGCCTGTTTCC
CCAAGCCTGGTTCCAGCAGAGATCTTGCCGACTGCACCAATGTTGGTCACGGGGAATCCTGGAGTTCCAG
TGCCAGCAGCTGCCGCAGCTGCTGCACAGAAGTTAATGCGGACAGACAGACTGGAGGTGTGTCGAGAGTA
CCAGCGTGGCAATTGCAACAGAGGAGAAAATGACTGTCGGTTTGCTCATCCTGCTGACAGCACAATGATT
GATACCAATGACAACACAGTCACTGTCTGCATGGATTACATCAAGGGGAGATGCTCTCGGGAAAAGTGCA
AATACTTCCATCCTCCCGCACACCTGCAAGCCAAGATCAAGGCTGCCCAATACCAGGTCAACCAGGCTGC
AGCAGCACAGGCTGCAGCTACTGCAGCTGCCATGACTCAGTCGGCTGTCAAATCACTGAAGCGACCCCTC
GAGGCAACCTTTGACCTGGGAATTCCTCAAGCTGTACTTCCCCCATTGCCAAAGAGGCCTGCTCTTGAAA
AAACCAACGGTGCCACCGCAGTCTTTAACACTGGTATTTTCCAATACCAACAGGCTCTAGCCAACATGCA
GTTACAGCAGCATACAGCATTTCTCCCACCAGATACCCATAATATCTGCCGAACATCTGACTAG

Translation (347 aa):
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLH
PPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSVAPSLATSASAAFNPYLGPVS
PSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMI
DTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQAKIKAAQYQVNQAAAAQAAATAAAMTQSAVKSLKRPL
EATFDLGIPQAVLPPLPKRPALEKTNGATAVFNTGIFQYQQALANMQLQQHTAFLPPDTHNICRTSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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