NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79957.1 Public Mus musculus 3 Hax1 23 108 98 CCDS HistoryNCBI Gene:23897Re-query CCDS DB by CCDS ID:79957.1Re-query CCDS DB by GeneID:23897See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79957.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000197786.4 ENSMUSP00000142627.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197786.4Link to Ensembl Protein Viewer:ENSMUSP00000142627.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197786Re-query CCDS DB by Protein ID:ENSMUSP00000142627
Original member NCBI NM_001282032.1 NP_001268961.1 Updated not alive Link to Nucleotide Sequence:NM_001282032.1Link to Protein Sequence:NP_001268961.1Re-query CCDS DB by Nucleotide ID:NM_001282032Re-query CCDS DB by Protein ID:NP_001268961
Current member NCBI NM_001282032.2 NP_001268961.1 Accepted alive Link to Nucleotide Sequence:NM_001282032.2Link to Protein Sequence:NP_001268961.1Re-query CCDS DB by Nucleotide ID:NM_001282032Re-query CCDS DB by Protein ID:NP_001268961Link to BLAST:NP_001268961.1

Chromosomal Locations for CCDS 79957.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89995625 89995710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89995814 89995904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89996011 89996117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89996247 89996298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89997802 89998003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89998528 89998580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (591 nt):
ATGAGCGTCTTTGATCTTTTCCGAGGCTTTTTCGGCTTTCCTGGACCTCGGAGCCACAGAGATCCTTTTT
TTGGAGGGATGACTCGAGATGATGACGACGATGATGATGATGATGACGAAGCGGAGGAAGACAGAGGCGC
GTGGGGTCGAGAGAGCTATGCGTTTGATGGTTCTCAGCCTCCAGAGGAATTCGGTTTCAGCTTCAGCCCC
AGGGGAGGGATGCGATTCCACGGCAACTTTGGCTTTGATGATCTATTGGATGATACATGGCCTGTGAGTC
CCCATTCTAGAGCCAAAGAGGACAAAGATCTTGACTCCCAGGTTTCCCAGGAAGGTCTGGGTCCACTTCT
TCAACCCCAGCCCAAATCGTATTTCAAAAGTATCTCTGTGACCAAGATCACTAAGCCAGATGGGACAGTG
GAGGAACGCCGCACTGTGGTAGACAGTGAGGGCCGGAGGGAGACCACAGTGACCCATCAAGAAGCCCATG
ACAGTTCCAGAAGTGATCCAGACTCTCAGAGATCTTCAGCTTTGGATGATCCCTTTTCCATTCTGGATTT
GCTACTAGGACGTTGGTTTCGGTCCCGATAG

Translation (196 aa):
MSVFDLFRGFFGFPGPRSHRDPFFGGMTRDDDDDDDDDDEAEEDRGAWGRESYAFDGSQPPEEFGFSFSP
RGGMRFHGNFGFDDLLDDTWPVSPHSRAKEDKDLDSQVSQEGLGPLLQPQPKSYFKSISVTKITKPDGTV
EERRTVVDSEGRRETTVTHQEAHDSSRSDPDSQRSSALDDPFSILDLLLGRWFRSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH