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Report for CCDS79993.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79993.1 Public Mus musculus 3 Lrig2 23 108 98 CCDS HistoryNCBI Gene:269473Re-query CCDS DB by CCDS ID:79993.1Re-query CCDS DB by GeneID:269473See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79993.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000198332.1 ENSMUSP00000142540.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198332.1Link to Ensembl Protein Viewer:ENSMUSP00000142540.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198332Re-query CCDS DB by Protein ID:ENSMUSP00000142540
Original member Current member NCBI NM_001310698.1 NP_001297627.1 Accepted alive Link to Nucleotide Sequence:NM_001310698.1Link to Protein Sequence:NP_001297627.1Re-query CCDS DB by Nucleotide ID:NM_001310698Re-query CCDS DB by Protein ID:NP_001297627Link to BLAST:NP_001297627.1

Chromosomal Locations for CCDS 79993.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 104457765 104457964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104461401 104461688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104462659 104462787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104463859 104464308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104465487 104465768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104467043 104467363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104468485 104468648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104479782 104479850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104480109 104480180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104481855 104481935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104490530 104490673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104490868 104491011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104491411 104491554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104491689 104491832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104494058 104494192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104494631 104494705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104497489 104497554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 104511456 104511691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3144 nt):
ATGGCGGCCGCGCCCCGCGGCATCTGGGAGCAGCGGCGCCTGGGCTGTGGGTTGGGACCCCTCGCACGGT
TGCTCATCCTTGCGCAGGCGCTGCGGCTGCTGCCCGCTGCCCGAGCCGGCCTGTGCCCGGCGCCCTGCGC
CTGCCGTCTTCCTCTGCTGGACTGCAGTCGCAGGAAGCTGCCCGCGCCCAGCTGGAGGGCACTGTCGGGC
CCGCTGCCCTCCGACATCTCCAGCCTGGATTTGAGTCATAACCGGTTGTCTAACTGGAACAACACCTTGG
AATCACAAACATTACAAGAAGTGAAAATGAATTACAATGAGCTAACAGAGATACCATATTTTGGAGAACC
AACACCTAATATTACTCTACTTTCATTGGTGCATAATTTAATCCCAGAAATAAATGCAGAAGCATTCGAG
CTTTATTCTGCTCTTGAGAGTTTAGACCTCAGTTCCAATATAATATCAGAAATCAAGACATCTTCATTTC
CTCGAATGTCACTGAAATACCTGAATTTGAGCAATAATAGGATAAGCACCTTGGAGGCTGGCTGCTTTGA
CAACTTATCAGATTCTTTATTAGTGGTAAAACTGAACCGGAACCGAATTAGCATGATTCCACCCAAGGTC
TTCAAGCTGCCTCATCTCCAGTTCTTGGAACTGAAAAGAAACAGGATTAAAATTGTAGAAGGCCTTACCT
TCCAAGGGCTTGATTCTTTACGCTCATTGAAAATGCAGCGGAATGGAATTAGCAAACTCAAAGATGGAGC
ATTTTTTGGCTTGAATAATATGGAAGAATTAGAACTGGAACATAATAACCTTACAGGAGTGAACAAGGGG
TGGCTATATGGCTTGCGAATGTTACAGCAACTGTATATGAGCCAGAATGCTATTGAAAAAATCAGCCCCG
ATGCATGGGAGTTCTGCCAGAGACTGTCTGAACTGGATTTGTCCTATAACCAGCTGACCCGCCTTGATGA
ATCTGCCTTTGTGGGTCTGAGCTTACTGGAGAGATTGAATTTAGGGGACAATAGAGTCACTCACATTGCT
GATGGTGTATTTAGGTTTCTTTCCAATCTTCAGACATTAGATTTGAGAAACAATGACATTTCATGGGCCA
TAGAAGATGCTAGCGAAGCCTTTTCTGGACTCAAAAGTCTCACTAAGTTAATCTTGCAAGGAAACCGGAT
TAAGTCAGTTACACAGAAAGCATTCATTGGCCTTGAGTCCCTTGAGTATCTAGATTTGAACAACAATGCT
ATAATGTCTATCCAAGAAAATGCTTTTTCTCAGACTCACTTAAAGGGACTTGTTCTGAACACAAGCAGTT
TGCTCTGCGATTGTCATTTGAAGTGGTTACTTCAGTGGCTGGTGGATAACAATTTCCATCATTCTGTGAA
TGTAAGCTGTGCACATCCTGAATGGTTAGCGGGGCAAAGCATCTTGAATGTGGACCTGAAAGATTTTGTC
TGTGATGATTTTCTGAAGCCTCAGATAAGGACACACCCTGAAAGCACAATTGCATTAAGAGGTGTTAATG
TGACACTGACGTGCACTGCAGTGAGCAGCAGCGATTCACCCATGTCCACCATATGGCGCAAGGACAGTGA
GATCCTGTATGATGTGGATATTGAGAATTTTGTTCGTTATCGGCAGCAGGATGGAGAAGCTCTAGAATAT
ACTAGTGTCTTGCGCCTCTTCAGTGTGAACTTCACAGATGAAGGGAAATACCAGTGCATTGTTACTAATC
ACTTTGGTTCTAATTATTCTCAGAAAGCCAAATTGACTGTAAATGAGATGCCGTCTTTTTTGAAAACTCC
AATGGATCTAACTATTCGCACTGGTGCCATGGCAAGATTAGAATGTGCTGCAGAGGGGCACCCTACACCT
CAGATTTCCTGGCAGAAGGATGGTGGCACTGATTTTCCTGCAGCCCGAGAAAGACGCATGCATGTCATGC
CTGAGGATGATGTCTTCTTCATTGCCAATGTGAAGATAGAAGATATGGGAATCTATAGCTGCATGGCACA
GAATATAGCAGGAGGCCTCTCAGCAAACGCCTCACTCACAGTGTTAGAGACACCCTCGTTTATTAGGCCT
CTGGAGGACAAGACCGTCACCCGAGGTGAGACAGCGGTATTGCAGTGCATCGCTGGAGGAAGTCCTGCTC
CTCGCCTCAATTGGACCAAGGATGATGGGCCACTCCTAGTAACAGAACGACACTTCTTTGCTGCAGCCAA
TCAGCTTCTCATCATTGTAGATGCTGGGCTAGAAGATGCTGGAAAATATACCTGCCTTATGTCTAACACT
CTTGGGACAGAACGGGGACATATTTACTTAAATGTCATTTCATCCCCCAATTGTGACTCTTCTCAGAGTA
GCATTGGGCATGAGGATGATGGTTGGACCACAGTTGGCATTGTCATCATTGTTGTGGTCTGCTGTGTCGT
GGGCACATCTTTGATCTGGGTCATTGTCATTTACCACATGAGAAGGAAAAATGAAGACTACAGCATCACA
AACACAGACATTCCCAGCTATTTGTCTTCACAAGGAACATTGTCTGAACCACAGGAAGGCTACAGCAACT
CTGAGGCAGGCAGCCATCAGCAACTTATGCCTCCTGCCAACGGGTACACACACAGAGGCACTGACGGTGG
CGCTGGTACCCGGGTGATCTGTTCAGATTGTTACGACAATGCCAACATCTACTCGAGGACCAGAGAGTAC
TGTCCATATACCTATATTGCTGAGGAGGATGTGTTAGATCAGGCACTCTCCAGCCTCATGGTCCAGATGC
CCAAGGAGACGTTTTTGTCACATCCTCCCCAAGATGCTGCTAATCTGGAGAGTCTGATACCATCAGCAGA
GAGAGAGCCGGCTGCCTTTCCCACCAACCATGAGAGGATGACTGAGAACCTTCCCTTCTCACAGAGGAGC
AGTGAAATATTTCAGCGGCCTCTTTGGAACATGAACAGAGAACTGGGCCTACTTCCCTTCTCCCAGCAGC
CTGTCCTTGAGTCACCAGAGCTGACAGAGAGGGATCCAAATTGCTCTTCACCTGTGACTTGCCGCAGGTT
ACATGACCATGCTTTTGATTTTAGTAGGACTCGGATCATTCAAGATGGTACTGAGGGCACATGA

Translation (1047 aa):
MAAAPRGIWEQRRLGCGLGPLARLLILAQALRLLPAARAGLCPAPCACRLPLLDCSRRKLPAPSWRALSG
PLPSDISSLDLSHNRLSNWNNTLESQTLQEVKMNYNELTEIPYFGEPTPNITLLSLVHNLIPEINAEAFE
LYSALESLDLSSNIISEIKTSSFPRMSLKYLNLSNNRISTLEAGCFDNLSDSLLVVKLNRNRISMIPPKV
FKLPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTGVNKG
WLYGLRMLQQLYMSQNAIEKISPDAWEFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHIA
DGVFRFLSNLQTLDLRNNDISWAIEDASEAFSGLKSLTKLILQGNRIKSVTQKAFIGLESLEYLDLNNNA
IMSIQENAFSQTHLKGLVLNTSSLLCDCHLKWLLQWLVDNNFHHSVNVSCAHPEWLAGQSILNVDLKDFV
CDDFLKPQIRTHPESTIALRGVNVTLTCTAVSSSDSPMSTIWRKDSEILYDVDIENFVRYRQQDGEALEY
TSVLRLFSVNFTDEGKYQCIVTNHFGSNYSQKAKLTVNEMPSFLKTPMDLTIRTGAMARLECAAEGHPTP
QISWQKDGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNIAGGLSANASLTVLETPSFIRP
LEDKTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLLVTERHFFAAANQLLIIVDAGLEDAGKYTCLMSNT
LGTERGHIYLNVISSPNCDSSQSSIGHEDDGWTTVGIVIIVVVCCVVGTSLIWVIVIYHMRRKNEDYSIT
NTDIPSYLSSQGTLSEPQEGYSNSEAGSHQQLMPPANGYTHRGTDGGAGTRVICSDCYDNANIYSRTREY
CPYTYIAEEDVLDQALSSLMVQMPKETFLSHPPQDAANLESLIPSAEREPAAFPTNHERMTENLPFSQRS
SEIFQRPLWNMNRELGLLPFSQQPVLESPELTERDPNCSSPVTCRRLHDHAFDFSRTRIIQDGTEGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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