NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80263.1 Under review, update Mus musculus 5 Poln 23 108 98 CCDS HistoryNCBI Gene:272158Re-query CCDS DB by CCDS ID:80263.1Re-query CCDS DB by GeneID:272158See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 80263.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202638.3 ENSMUSP00000143793.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202638.3Link to Ensembl Protein Viewer:ENSMUSP00000143793.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202638Re-query CCDS DB by Protein ID:ENSMUSP00000143793
Original member NCBI NM_001289804.1 NP_001276733.1 Updated not alive Link to Nucleotide Sequence:NM_001289804.1Link to Protein Sequence:NP_001276733.1Re-query CCDS DB by Nucleotide ID:NM_001289804Re-query CCDS DB by Protein ID:NP_001276733
Current member NCBI NM_001289804.2 NP_001276733.2 Pending alive Link to Nucleotide Sequence:NM_001289804.2Link to Protein Sequence:NP_001276733.2Re-query CCDS DB by Nucleotide ID:NM_001289804Re-query CCDS DB by Protein ID:NP_001276733Link to BLAST:NP_001276733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001276733.2 820 Q7TQ07-2 820 100% 0 0

Chromosomal Locations for CCDS 80263.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 34007429 34007509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34008840 34008901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34009587 34009654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34013502 34013580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34014243 34014353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34032746 34032828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34077097 34077211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34078916 34078993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34079902 34079959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34103898 34103963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34105176 34105229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34107087 34107143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34108314 34108409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34109351 34109434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34113309 34113373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34114079 34114139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34115360 34115428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34116809 34116966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34118886 34118998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34122606 34122796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34129103 34129603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34133111 34133190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 34149717 34149855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGAAAATGGAAAATTATGAGGCATGTGTAGGTTTTGATGTCTGTGAGATACCCCTCTCTGCTGTTGCTC
AGAAGATTATGTCTGCTATGCGTTCAGGTGATTTCATGGATTCTAGGAATGAGGGAGAGAGTACAAACAC
TTCAAAAGTGGCAAAGAAATCCAGTGTTCATTACTCAGTATTAGCTGAACATGAGGAGACTCAATCACTA
GGAACAAAGAACCCCGAGTCATTAATAACCCAGACACCAAGAGGATCCATTGAGCTCTGTCCTCAGCCCT
CCATTACTAAGCTCACATGTCAGCTCTCTGCTGGTCAAGTACAGAACAGCATCAGCTCATTGGGTCTTTC
CAGTTATTTAATTCCACAGTGTGATCAGGAAGCTTCAGTTTTACCGAACATGGAGCATAAGAGACAGCAT
TTCCTAAAGGAAAATATAGGCAAAGAAGATAAGGACAACTCGAGTCTTAAAAGAAAATATATTACATGTA
GTAAATCCTCAGAAAAAGCAAGTAAACACACAGCTCTGGAAAAAGATACTGATGGGACTGAATCCTGGCC
AAACTCCAGGGACACAAGAGCTTTGGGGGAAAGGCTGTGTGATGTTAGATATTTGGGTGATTTGGCCAAA
GCCCAGCTGATGGATGCTCTCAAGCAGGCAGCAGCCCTGGTGGTGACATTGATGTACAAGGATGGTTCCA
CACAGCTGAGCGCCAAGGAGGCTTTAACTTGTACTGTTAAAGGAATTGTAGTGTTACTAAAAAGCCATGT
AGGCAACAGCACTCTGACTCTCCCAGCCCATGGTGGTGCTCTGGAAAAGGACTTCATATCCGAAGATCAC
TGTGTCTACATACATACGGAGCATTCCCCTTTCTGGGACCCAAAGCAAGAAGCACATAGTCTATTTGTCA
GGAACATACTGTTTTGGACACTGAGGTGTAAATGTCCCGTTGTTTGTTTTAATGCCAAGGACTTTGTGAG
AACAGTGCTGCAGCTCTATGGTGAAGATGGCAGTTGGAAGCATGTTGCTGATTTTGTAGGACTAGATCCC
AGAGTTGCTGCATGGCTCATAGACCCCAGTGACACTGCACCTTCATTTGAAGATTTAGTAGCAAAACACC
TAGAAAAGTCCATCACAGTCAAACCAAGCAGCACATTCAGAGAAGCCTCAAGAAATACTTTGAGTCAGAA
TGTATTTATGAATCTGAAGATACTCTACGACCTTACAATGGATCTTTGTTCTAAGTTGAAGGCTTATGGC
TTATGGCAGCTATTTTGCACTTTGGAGCTTCCATTGATACCAATTTTGGCAGTGATGGAAAACCATAAGA
TTCCAGTTGACAAAGAAGAAATGGAGAGGACATCGGCACTCCTCGGGGCTCGCCTCAAGGAATTGGAGCA
AGAAGCCCATTTTGTTGCAGGAGAACAGTTTCTTATAATGAGTAATAATCAACTTCGTGAGATCCTCTTT
GGCAAGTTGAAGCTGCACTTGTTGAGTCAGAGGAAACATCTTCCCAGAACTGGGCTGCAGAACCAGCTGT
CCACATCAGAAGCCATGTTAAATTCTCTACAAGACCTTCACCCATTACCCAAGTTAATTTTGGAATATAG
ACAGGTTCACAAGATCAAGTCAACTTTTATAGATGGATTACTAGCTTATATGAAAAAGGGCTCCATCTCT
TCTACATGGAATCAGACTGGAACTGTGACAGGGAGACTTTCAGCCAAGCATCCAAATATCCAGGGTATCT
CCAAGCACCCAATTAAGATTTCTAAGCCTTGGAATTTTAAAGGTAAAGAAGAGGAGACTGTCACCATCTC
ACCAAGAACCCTGTTTGTGTCCTCTGAAGGCCACACCTTCCTGGCAGCAGACTTTTCACAGATTGAATTG
CGCATTCTTGCACATTTATCTGGGGATCCAGAGCTTTTGAAGTTATTCCAGGAATCTGAAAGAGATGATG
TATTTTCTACCCTGACTTCACAGTGGAAGGACATTCCCATAGAGCGTGTGACACACATGGACAGAGAACA
AACCAAGAAAGTGGTGTACTCCGTGGTCTATGGAGCTGGCTATGTGACATCCATCTTGGGTAGAAGGAGG
CCTCTCCCGAGGATCTGTGCACAGGACCAGCAGCTTCGGGCACAAGCAGAGCGACAGGCAGTAAACTTTG
TGGTACAAGGCTCAGCCGCAGACCTCTGTAAGCTAGCCATGATTCGCATCTCTACTGCAGTAGCCACATC
CCCGACCTTGACAGCCAGGTTAGTTGCCCAAATTCATGATGAGCTGCTGTTTGAAGTAGAAGACACTCAG
GTCCCTGAGTTTGCAGCTCTTGTCAGAAGGATCATGGAGTCCTTGCAACAGGTACAGACCCTGGAACTGC
AGCTGCAGGTGCCCCTAAAAGTGAACTTGAGTGTTGGCCGCTCATGGGGACACCTGACCCCACTGCAGGA
GATCCTGGGCTCAGCCTGA

Translation (822 aa):
MKMENYEACVGFDVCEIPLSAVAQKIMSAMRSGDFMDSRNEGESTNTSKVAKKSSVHYSVLAEHEETQSL
GTKNPESLITQTPRGSIELCPQPSITKLTCQLSAGQVQNSISSLGLSSYLIPQCDQEASVLPNMEHKRQH
FLKENIGKEDKDNSSLKRKYITCSKSSEKASKHTALEKDTDGTESWPNSRDTRALGERLCDVRYLGDLAK
AQLMDALKQAAALVVTLMYKDGSTQLSAKEALTCTVKGIVVLLKSHVGNSTLTLPAHGGALEKDFISEDH
CVYIHTEHSPFWDPKQEAHSLFVRNILFWTLRCKCPVVCFNAKDFVRTVLQLYGEDGSWKHVADFVGLDP
RVAAWLIDPSDTAPSFEDLVAKHLEKSITVKPSSTFREASRNTLSQNVFMNLKILYDLTMDLCSKLKAYG
LWQLFCTLELPLIPILAVMENHKIPVDKEEMERTSALLGARLKELEQEAHFVAGEQFLIMSNNQLREILF
GKLKLHLLSQRKHLPRTGLQNQLSTSEAMLNSLQDLHPLPKLILEYRQVHKIKSTFIDGLLAYMKKGSIS
STWNQTGTVTGRLSAKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEGHTFLAADFSQIEL
RILAHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGYVTSILGRRR
PLPRICAQDQQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDTQ
VPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSWGHLTPLQEILGSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH