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Report for CCDS80287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80287.1 Public Mus musculus 5 Tbc1d1 23 108 98 CCDS HistoryNCBI Gene:57915Re-query CCDS DB by CCDS ID:80287.1Re-query CCDS DB by GeneID:57915See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80287.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043893.12 ENSMUSP00000044577.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043893.12Link to Ensembl Protein Viewer:ENSMUSP00000044577.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043893Re-query CCDS DB by Protein ID:ENSMUSP00000044577
Original member Current member NCBI NM_001310611.1 NP_001297540.1 Accepted alive Link to Nucleotide Sequence:NM_001310611.1Link to Protein Sequence:NP_001297540.1Re-query CCDS DB by Nucleotide ID:NM_001310611Re-query CCDS DB by Protein ID:NP_001297540Link to BLAST:NP_001297540.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297540.1 1255 Q60949-1 1255 100% 0 0

Chromosomal Locations for CCDS 80287.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 64173480 64173896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64256715 64257155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64260353 64260442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64263469 64263579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64264326 64264458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64271090 64271181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64275395 64275505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64277916 64278044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64279331 64279417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64281765 64282045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64283967 64284125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64284690 64284809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64285945 64286084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64311059 64311244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64316354 64316515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64324451 64324609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64333347 64333591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64335278 64335437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64339562 64339731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64345252 64345425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 64349730 64349930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3768 nt):
ATGGAGGCAATCACATTCACAGCGAGGAAGCATCCGTTCCCTAACGAAGTCTCCGTGGACTTCGGCTTGC
AGCTGGTGGGCTCCTTACCCGTGCATTCTCTCACCACTATGCCCATGCTGCCGTGGGTGGTAGCCGAGGT
ACGAAGACTCAGTGGCCAGTGCTCTAAAAAGGAGCCTAGGACAAAGCAAGTCCGCCTTTGGGTTTCGCCC
TCCGGACTGCGGTGCGAGCCTGACCTGGAGAAAAGTCAACCATGGGACCCGCTCATCTGTTCCAGCATCT
TTGAGTGCAAGCCTCAGCGTGTGCACAAACTGATTCACAACAGTCACGACCCGAGCTACTTTGCTTGCCT
CATTAAGGAGGATGCTGCGCACAGGCAGAGCCTCTGCTATGTGTTTAAAGCAGACGATCAAACAAAAGTG
CCTGAGATCATCAGCTCCATCCGGCAGGCCGGGAAGATTGCCCGCCAGGAAGAGCTGCGTTGCCCCTCCG
AGTTCGACGATACCTTCGCCAAAAAGTTCGAGGTGCTCTTCTGTGGCCGGGTGACTGTGGCTCACAAGAA
GGCCCCACCCGCACTGATTGACGAGTGTATCGAGAAGTTCAACCATGTGAGCTGTGGTCGCAGAACGGAC
TGGGAAGCGCCCACCGGGCAGCCATCAGCGCCTGGCCCCAGGCCCATGCGCAAATCCTTCTCACAGCCTG
GACTGCGCTCGCTGGCCTTCAGGAAGGAGTTCCAGGACGCTAGCCTCCGCAGTAGCACCTTTAGCTCCTT
TGACAATGACATAGAGAACCACCTCATCGGTGGGCACAATGTGGTTCAGCCCACAGACATGGAGGAGAAC
CGAACTATGCTGTTCACGATTGGCCAATCTGAAGTTTACCTCATCAGTCCTGACACCAAAAAGATTGCAC
TGGAGAAAAATTTTAAGGAGATATCCTTTTGCTCTCAGGGCATCAGACATGTGGACCACTTTGGATTCAT
CTGCCGAGAGTGCTCGGGTGGCGGCAGTGGCGGCTTTCATTTTGTCTGTTACGTGTTCCAGTGCACAAAT
GAAGCTCTGGTTGACGAGATCATGATGACTCTGAAGCAGGCTTTCACGGTAGCTGCGGTGCAGCAGACGG
CTAAGGCACCAGCCCAGCTCTGTGAGGGCTGCCCCTTGCAAGGCCTGCACAAGCTCTGCGAAAGGATAGA
GGGAATGAATTCATCTAAAACCAAATTAGAACTCCAGAAGCACTTGACCACACTGACCAATCAGGAGCAG
GCCACCATATTCGAGGAGGTTCAGAAATTGAGACCAAGAAACGAGCAGCGAGAGAATGAATTAATTATTT
CTTTTCTGAGGTGCTTATATGAAGAGAAGCAAAAAGAGCACAGCCACACTGGGGAGCCAAAGCAGACACT
ACAGGTGGCAGCAGAGAATATTGGGAGTGACCTGCCACCCAGTGCTAGCCGGTTCAGGTTAGATTCGCTG
AAGAACAGAGCAAAGAGGTCCTTAACAGAGTCCCTAGAGAGCATTCTGTCCCGGGGTAATAAAGCCAGAG
GCCTGCAGGACCATTCCGCCAGTGTGGATCTGGACAGCTCCACTTCTAGTACTCTAAGTAACACCAGCAA
AGAGCTGTCCATGGGTGACAAGGAGGCCTTCCCCGTCTCTGAGACCTCCTTCAAGCTCCTTGGCTCCTCA
GATGACCTGTCCAGTGACTCAGAGGGCCACATTGCAGAAGAGTCTGCCCTGTTGTCACCCCAGCAGGCGT
TCAGAAGGAGAGCCAACACCCTGAGTCATTTCCCAGTAGAGTGCCCTGCGCCTCCAGAACCTGCCCAGAG
CTCTCCAGGGGTCTCTCAAAGGAAACTCATGCGGTACCACTCCGTGAGCACAGAGACGCCTCATGAACGC
AATGTGGACCATCTTCCTGGGGGTGAGTCTCAGGGCTGCCCAGGGCAGCCTTCAGCTCCGCCTCCACCTC
GTCTTAACCCCTCCGCCTCCTCACCAAACTTCTTTAAGTACCTAAAACACAATTCCAGTGGAGAGCAAAG
TGGGAATGCTGTGCCAAAAAGTGTCTCCTACCGTAATGCCCTGCGGAAAAAACTCCATTCTTCCTCCTCT
GTGCCAAATTTTCTAAAATTTCTGGCTCCCGTAGATGAAAATAACACCTGTGACTTTAAGAACACGAACA
GGGACTTTGAATCCAAAGCAAACCACCTGGGTGACACAGATGGGACCCCCGTGAAGACCCGGCGGCACTC
GTGGAGACAGCAGATATTCCTTCGAGTGGCCACTCCACAGAAGGCTTGTGACTCCCCGAGCAGATATGAA
GATTATTCCGAGCTGGGAGAGCTCCCTCCACGCTCCCCTTTAGAACCGGTGTGTGAGGACGGCCCATTTG
GCCCAGTACAGGAAGAAAAGAGGAAGACGTCACGCGAGCTTCGAGAGCTGTGGAAAAAGGCCATCTTGCA
GCAGATCCTGCTGCTCAGGATGGAGAAGGAGAATCAGAAGCTACAAGCCTCTGAAAACGATTTGCTGAAC
AAACGCCTCAAGCTTGACTATGAAGAAATCACTCCGTGTCTTAAAGAAGTCACTACAGTGTGGGAAAAGA
TGCTTAGCACTCCAGGAAGATCCAAAATTAAGTTTGACATGGAAAAAGTGCACTCAGCTGTTGGGCAAGG
TGTGCCACGTCATCACCGAGGTGAGATCTGGAAATTTCTAGCTGAGCAGTTCCACCTTAAACACCCATTT
CCTAGTAAACAGCAGCCAAAGGACGTGCCCTACAAAGAGCTCCTGAAGAAGCTGACCTCGCAGCAGCACG
CCATTCTCATCGACCTCGGGCGAACCTTTCCAACACATCCATACTTCTCTGCCCAGCTTGGAGCAGGTCA
GCTGTCACTTTACAACATTCTGAAGGCCTACTCGCTTCTGGACCAGGAGGTTGGATACTGCCAAGGTCTC
AGCTTTGTGGCAGGCATTTTGCTTCTTCACATGAGTGAGGAAGAGGCGTTCAAGATGCTCAAGTTCCTGA
TGTTTGACATGGGGCTGCGGAAACAGTATCGGCCAGACATGATTATTTTGCAGATCCAGATGTACCAGCT
GTCACGGCTCCTCCACGATTACCACCGAGACCTCTACAACCACCTGGAAGAGCACGAGATCGGCCCCAGC
CTCTACGCGGCTCCCTGGTTTCTCACTGTGTTCGCCTCACAGTTCCCACTCGGCTTTGTAGCCAGAGTCT
TTGATATGATCTTCCTTCAGGGATCAGAGGTCATATTTAAAGTAGCTTTAAGTCTTTTGGGGAGCCATAA
GCCCTTGATTCTACAGCATGAGAACCTGGAAACCATAGTGGACTTCATAAAGAACACACTCCCCAACCTG
GGCCTGGTGCAGATGGAGAAGACCATCAGTCAGGTGTTTGAGATGGACATCGCCAAGCAGCTCCAGGCCT
ATGAGGTCGAGTACCACGTGCTCCAGGAGGAGCTTATTGAGTCCTCGCCTCTCAGTGACAACCAAAGAAT
GGAGAAATTGGAGAAAACCAACAGCAGCTTGCGCAAACAGAACCTTGACCTCCTGGAGCAGTTGCAGGTG
GCAAATGCTAGGATCCAAAGCCTTGAAGCCACGGTAGAGAAACTTCTTACCAGCGAGAGTAAGCTGAAGC
AGGCTGCGCTGACCCTGGAGGTGGAGCGCTCCGCCCTGCTGCAGATGGTGGAGGAGCTGCGGAGGCAAAG
CGCCCGGCCCAGCACTCCAGAGCCAGACTGCACCCAGCTGGAGCCCACAGGCGATTGA

Translation (1255 aa):
MEAITFTARKHPFPNEVSVDFGLQLVGSLPVHSLTTMPMLPWVVAEVRRLSGQCSKKEPRTKQVRLWVSP
SGLRCEPDLEKSQPWDPLICSSIFECKPQRVHKLIHNSHDPSYFACLIKEDAAHRQSLCYVFKADDQTKV
PEIISSIRQAGKIARQEELRCPSEFDDTFAKKFEVLFCGRVTVAHKKAPPALIDECIEKFNHVSCGRRTD
WEAPTGQPSAPGPRPMRKSFSQPGLRSLAFRKEFQDASLRSSTFSSFDNDIENHLIGGHNVVQPTDMEEN
RTMLFTIGQSEVYLISPDTKKIALEKNFKEISFCSQGIRHVDHFGFICRECSGGGSGGFHFVCYVFQCTN
EALVDEIMMTLKQAFTVAAVQQTAKAPAQLCEGCPLQGLHKLCERIEGMNSSKTKLELQKHLTTLTNQEQ
ATIFEEVQKLRPRNEQRENELIISFLRCLYEEKQKEHSHTGEPKQTLQVAAENIGSDLPPSASRFRLDSL
KNRAKRSLTESLESILSRGNKARGLQDHSASVDLDSSTSSTLSNTSKELSMGDKEAFPVSETSFKLLGSS
DDLSSDSEGHIAEESALLSPQQAFRRRANTLSHFPVECPAPPEPAQSSPGVSQRKLMRYHSVSTETPHER
NVDHLPGGESQGCPGQPSAPPPPRLNPSASSPNFFKYLKHNSSGEQSGNAVPKSVSYRNALRKKLHSSSS
VPNFLKFLAPVDENNTCDFKNTNRDFESKANHLGDTDGTPVKTRRHSWRQQIFLRVATPQKACDSPSRYE
DYSELGELPPRSPLEPVCEDGPFGPVQEEKRKTSRELRELWKKAILQQILLLRMEKENQKLQASENDLLN
KRLKLDYEEITPCLKEVTTVWEKMLSTPGRSKIKFDMEKVHSAVGQGVPRHHRGEIWKFLAEQFHLKHPF
PSKQQPKDVPYKELLKKLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGL
SFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPS
LYAAPWFLTVFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKNTLPNL
GLVQMEKTISQVFEMDIAKQLQAYEVEYHVLQEELIESSPLSDNQRMEKLEKTNSSLRKQNLDLLEQLQV
ANARIQSLEATVEKLLTSESKLKQAALTLEVERSALLQMVEELRRQSARPSTPEPDCTQLEPTGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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