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Report for CCDS80291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80291.1 Public Mus musculus 5 Nsun7 23 108 98 CCDS HistoryNCBI Gene:70918Re-query CCDS DB by CCDS ID:80291.1Re-query CCDS DB by GeneID:70918See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80291.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000202994.3 ENSMUSP00000144498.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202994.3Link to Ensembl Protein Viewer:ENSMUSP00000144498.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202994Re-query CCDS DB by Protein ID:ENSMUSP00000144498
Original member NCBI NM_001302834.1 NP_001289763.1 Updated not alive Link to Nucleotide Sequence:NM_001302834.1Link to Protein Sequence:NP_001289763.1Re-query CCDS DB by Nucleotide ID:NM_001302834Re-query CCDS DB by Protein ID:NP_001289763
Current member NCBI NM_001302834.2 NP_001289763.1 Accepted alive Link to Nucleotide Sequence:NM_001302834.2Link to Protein Sequence:NP_001289763.1Re-query CCDS DB by Nucleotide ID:NM_001302834Re-query CCDS DB by Protein ID:NP_001289763Link to BLAST:NP_001289763.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001289763.1 691 Q14AW5-3 691 100% 0 0

Chromosomal Locations for CCDS 80291.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 66260929 66261244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66264009 66264067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66264491 66264621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66276515 66276667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66276977 66277160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66278630 66278840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66283592 66283735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66289419 66289536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66294789 66294912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 66295384 66296019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2076 nt):
ATGCTGGACCCAACGAGTGAAAGGGACCTTTTTGACCAAGAAAACATGGAGGAGATCTCCCAACTCGCTT
CCCTGGAGATGTCGGGGGATGTAGTCGCCAATACAAACTCTTCAACCGTCGTCCTAGAAAAACCCAGCTA
CCCAGACTCCGTGTACGTTACGGCAGCGAACATTTTTCAGGGTATTCGGATCCAAAGGTCGCCAGACAAA
GTCATAATAAATTACGGAAGTGAACCCCTGCAGCCCTCCTCCTCCCGCTCCGAGGATGAATCTTTCCAGC
GCTTGTCCTATGAGTTGGCTTTCAGTACCCTGAAGTATCAAGATATTTTGGAAAGTATATTAATAGATAG
CTATATCTTCTCAAGTACCACAATCGCAAGTCAGCTGAACAGTCTTATCATTGTGATGCTGTATGACTTC
CAAGACAGAAAATTCCAGCCCCGCATCCTTTCCGAGAATGAAGAGACCATACCAGAAGTTCAAGAAGTCG
AGAACCTTCTAAACGGCTTTAAGACAAAATTGGCTGCAGCCTTGGCGAGATGTCGAATCAAACACGACGC
CCTCTCGATTTACCATATTCTGCCAGAGACAGTTAGGAAACAGGAACAAAGGGCCTCAACTTTGCCTCTT
TATGCTTGGATAAATACCAGTAAAATAAGCCTTGAAGAAGTCTATAATAATTTGAGGAGGAAAGGTTACT
CTAAAGTCAAGTCTATAACGAGTGTCAATGAGAAAGTCTATGCAGTAGACCAGCACTGCTTCAATGTCTT
AATTTTCCCAGCTCATCTCAAAACAGACCTTTTAAACATAGATCTCATAAAAGACTATAAACTTATTTTC
CAGGACAAATCTCGAAGTCTTGCCGTCCACTCTGTGAAGGCTTTGATAAACATCGATGATGATGTCCTAA
TGGTCAACACGGGTTCGTGGTACACAGTTGCCCATATGTCCATCTTAACAAGTGGTCACACTTCGAAAAT
CTTTGTATGTGGAATACAACAAGAAGAGAAGGATTTTAATGCGAGGAAACTTTTTACAAGAATGGGATGT
CAAAATATTGAAATACTTCACGAAACATTTCTTAGCATTGAATCCAAAGATCACCGGTTACAGAATGTGA
AGGTCATTCTGTTGCTACCTCGCTGTTCCAGCCTCGGTGTCAGCAACCCAGTGGAATTCATTCTAAATGA
ACACGAAGTTACCAAAGTTCAAGCAATTGTCTATTGCACATGTTCTGTTTCTAAAGAGGAAAATGAAGAC
GTTGTTGAGAAAGCACTGGAATATCAAAGCTCAGGGGTTAAAATGCAACCTTACAGACTCAGTCCTCCTG
TTCTCCCACTGTGCACCCTAAAAGAGATAGAACTGTCTATGGATAGATTCTTCAGATTGGAACCATCTGA
TATGAACAATGGCTGTTTTCTTTCTATCTTAACAAGAGAGCGGGACCCATCTGAGACAGTGTCAGTGAAA
GACGTTCTGGCCAGGGCAGCAGCCAAAGGTCTACTGGAAGGGGTTGAGGTTGGGAAGACGCTCAAAAGGG
ACAAGAAGAGGAAAAAATCGAAAGCACTGCCATCCAGGGCTCCTCACCATGGGGACCCACTTCGCGACCA
TTTGGCAGTGGATGGTAACGACACCAGCAACGTCCAAATGAAAATCTCCGAGCTCTTGCACCGAGAAAGC
AAGATAAGTACTTCAACAAAAATGTCCGCCCCAGCAAAGACTGTGTCTCAAGCCGGCACTTCCTCCCAAG
TCAGAAAGCCCAGCAAGCCTTTATCGACCCCACTGGTGAGGAATTTTTCCAGGCCGGTAGAAAGGCCAAC
GAACTTTGTGAGAGCGCGGCCAGAAGGCAAAGTGATTCCTTTGAAACCAATTGAAATCGTTCTGCCGCCA
GTGATATTCCCATTGAGTTCCCAGGGGCCCAGGGTTCAGATGCCAGCCACCCATTTTTATTACCGCTTCA
TTGGATCAAAGGTTGGTGTGCCCCGCTATCTTACATCCTCAACATCCAGAAGAAAGGAGAAGGTTAAGGA
GAGCACAACTTCCTCCCACGTCAGGCACCCTAGACCATGGCTCTGA

Translation (691 aa):
MLDPTSERDLFDQENMEEISQLASLEMSGDVVANTNSSTVVLEKPSYPDSVYVTAANIFQGIRIQRSPDK
VIINYGSEPLQPSSSRSEDESFQRLSYELAFSTLKYQDILESILIDSYIFSSTTIASQLNSLIIVMLYDF
QDRKFQPRILSENEETIPEVQEVENLLNGFKTKLAAALARCRIKHDALSIYHILPETVRKQEQRASTLPL
YAWINTSKISLEEVYNNLRRKGYSKVKSITSVNEKVYAVDQHCFNVLIFPAHLKTDLLNIDLIKDYKLIF
QDKSRSLAVHSVKALINIDDDVLMVNTGSWYTVAHMSILTSGHTSKIFVCGIQQEEKDFNARKLFTRMGC
QNIEILHETFLSIESKDHRLQNVKVILLLPRCSSLGVSNPVEFILNEHEVTKVQAIVYCTCSVSKEENED
VVEKALEYQSSGVKMQPYRLSPPVLPLCTLKEIELSMDRFFRLEPSDMNNGCFLSILTRERDPSETVSVK
DVLARAAAKGLLEGVEVGKTLKRDKKRKKSKALPSRAPHHGDPLRDHLAVDGNDTSNVQMKISELLHRES
KISTSTKMSAPAKTVSQAGTSSQVRKPSKPLSTPLVRNFSRPVERPTNFVRARPEGKVIPLKPIEIVLPP
VIFPLSSQGPRVQMPATHFYYRFIGSKVGVPRYLTSSTSRRKEKVKESTTSSHVRHPRPWL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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