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Report for CCDS80380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80380.1 Public Mus musculus 5 Rnf10 23 108 98 CCDS HistoryNCBI Gene:50849Re-query CCDS DB by CCDS ID:80380.1Re-query CCDS DB by GeneID:50849See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80380.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040555.14 ENSMUSP00000041778.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040555.14Link to Ensembl Protein Viewer:ENSMUSP00000041778.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040555Re-query CCDS DB by Protein ID:ENSMUSP00000041778
Original member NCBI NM_001302449.1 NP_001289378.1 Updated not alive Link to Nucleotide Sequence:NM_001302449.1Link to Protein Sequence:NP_001289378.1Re-query CCDS DB by Nucleotide ID:NM_001302449Re-query CCDS DB by Protein ID:NP_001289378
Current member NCBI NM_001302449.2 NP_001289378.1 Accepted alive Link to Nucleotide Sequence:NM_001302449.2Link to Protein Sequence:NP_001289378.1Re-query CCDS DB by Nucleotide ID:NM_001302449Re-query CCDS DB by Protein ID:NP_001289378Link to BLAST:NP_001289378.1

Chromosomal Locations for CCDS 80380.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115241985 115242058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115242393 115242551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115242634 115242691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115244021 115244121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115245849 115246004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115246880 115246981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115247169 115247286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115248582 115248715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115248915 115249170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115249397 115249522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115249970 115250130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115251066 115251202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115251277 115251461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115255350 115255440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115256974 115257173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115260119 115260315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115272257 115272413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2412 nt):
ATGCCGCAGAGCTCCCCCAGCGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGGCTCCAACAGCT
CC
TCCGCCTCCTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCGGCCGGCGA
G
TCTAAACCCAAGAGTGATGGAAAGAACTCAAATGGATCCAAGCGTTACAATCGCAAGCGTGAACCCTCC
TAC
CCCAAAAATGAAAATTTTAGCAACCAGTCCCGTCGCTCCAATTCACAGAAAAGCAAAACTTTTAACA
AG
ATGCCTCCTCAAAGGGGCGGTGGCAGCAGCAAACCCTTTAGCTCTTCTTCTAATGGTGGAAGACGAGA
T
GAGGTAGCAGAGGCTCAGCGGGCAGAGTTTAGCCCTGCCCAGTTCTCTGGCCCTAAGAAGATCAACCTG
AAC
CACTTGTTAAATTTCACCTTTGAACCACGTGGCCAGGCAGGTCACTTTGAAGGCAGTGGGCATGGCG
GC
TGGGGGAAGAGAAACAAGTGGGGACACAAGCCTTTCAACAAGGAGCTCTTTCTACAGGCCAACTGCCA
A
TTTGTGGTGTCTGAAGACCAAGACTACGCAGCTCACTTTGCTGACCCTGACACCTTAGTCAACTGGGAC
TTT
GTGGAACAAGTGCGCATCTGTAGCCATGAAGTGCCATCTTGCCCAATATGCCTCTATCCACCTACTG
CG
GCCAAGATAACGCGCTGTGGACACATTTTCTGCTGGGCATGCATCCTGCACTATCTTTCACTCAGTGA
G
AAAACCTGGAGCAAATGTCCCATCTGCTACAGCTCTGTGCATAAGAAGGATCTCAAGAGTGTTGTTGCC
ACA
GAGTCTCGACAGTATGCTGTGGGGGACACCATTACCATGCAGCTGATGAAGAGAGAGAAGGGAGTGT
TG
GTGGCCCTGCCCAAATCCAAGTGGGTGAATGTAGACCATCCTATTAACCTAGGAGATGAGCAGCTCAG
C
CAGTATTCCAAGCTGCTGCTGGCCTCGAAGGAGCAGGTGCTGCACCGGGTAGTTCTGGAGGAGAAAGGA
GCG
CTGGAGCAGCAGCTGGCAGAGGAGAAGCACACTCCTGAGTCCTGTTTCATTGAGGCTGCTATCCAGG
AG
GTCAAGATTCGGGAAGAAGCTCTGTCAGGAGTGGCTGGAGGCGGAGGGGAGGTCACTGGTGTTGTGGC
T
GCTCTGGAACACCTGGTGCTGATGGCTCCCCTGGCCACGGAGTCTGCTTTCCAACCCAGGAAGGGTGTG
CTG
GAGTATCTGTCTGCTTTTGATGATGAAGCTGCACAAGTTTGTTCTCTGGACCCCCCTGGTCCTCTTG
CC
CTCCCTTTGGTAGAAGAGGAGGAAGCAGTGTCTGAGCCAGAAGCCTGTGAGGACGCAGAGGTAGCCGA
T
GACAGTCTGGGAGAGGGGACTGTTGGTCCTGAGATGAGCCAGGAGGAGCCCATCACTAAGCCAGGCTTC
ACC
CAGCTCAGCAGCTCTCCGTGTTACTACTTCTACCAGGCGGAAGATGGACAGCACATGTTCCTGCACC
CT
GTCAACGTGCGCTGCCTTGTGCGGGAGTACGGCAGCCTGGAGCAGAGCCCAGAGAAGATCTCAGCAAC
C
GTGGTAGAGATTGCTGGGTATTCCATGTCTGAGGATGTTCGGCAGCGTCATAGGTATCTCTCTCACTTG
CCA
CTCACCTGTGAGTTCAGCATCTGTGAACTGGCTCTGCAGCCTCCTGTGGTCTCTAAGGAAACCCTAG
AG
ATGTTCTCAGATGACATTGAGAAAAGGAAGCGTCAGCGCCAAAAGAAGGCTCGCGAGGAGCGTCGCCG
A
GAGCGCAGAATTGAGATGGAGGAGAACAAGAGACAGGGCAGGTATCCCGAGGTCCACATTCCCCTCGAG
AAC
CTACAGCAGTTTCCGGCCTTCAATTCCTATACCTGTCCCTCTGATTCTGCTTTGGGTCCCACCAGCA
CT
GAGGGCCATGGGGCCCTATCCCTGTCTCCTCTGAGCAGAAGTCCAGGCTCCCATGCAGACTTTCTGCT
G
ACCCCTCTGTCACCCACTGCCAGTCAGGGCAGTCCTTCCTTCTGCGTTGGGAGTCTGGAAGACGACTCT
CCC
TTCCTTTCCTTTGCCCAGATGCTGAGGGTTGGCAAAGCAAAAGCAGACGGGTGGCCCAAAACTGCTC
CA
AAGAAAGATGACAATAGCTTGGTTCCTCCCGCCCCTGTGGACAGTGATGGGGAGAGTGACAATTCTGA
C
CGTGTTCCTGTGCCCAGTTTCCAAAATTCCTTCAGCCAAGCTATCGAAGCAGCCTTCATGAAATTGGAC
ACA
CCAGCTACTTCAGACCCCCTCTCTGACAGAGGAGGGAAGAAAAGGAAGAGACAGAAGCAGAAGCTGC
TG
TTCAGCACCTCGGTCGTCCACACCAAGTGA


Translation (803 aa):
MPQSSPSAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSNGSKRYNRKREPS
Y
PKNENFSNQSRRSNSQKSKTFNKMPPQRGGGSSKPFSSSSNGGRRDE
VAEAQRAEFSPAQFSGPKKINL
N
HLLNFTFEPRGQAGHFEGSGHGGWGKRNKWGHKPFNKELFLQA
NCQFVVSEDQDYAAHFADPDTLVNWD
F
VEQV
RICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVA
T
ESRQYAVGDTITMQLMKREKGVLVALPKSKWVNVDHPINLG
DEQLSQYSKLLLASKEQVLHRVVLEEKG
A
LEQQLAEEKHTPESCFIEAAIQEVK
IREEALSGVAGGGGEVTGVVAALEHLVLMAPLATESAFQPRKGV
L
EYLSAFDDEAAQVCSLDPPGPLALPLVEEEEAVSEPEACEDAEVADDSLGEGTVGPEMSQEEPITKPGF
T
QLSSSPCYYFYQ
AEDGQHMFLHPVNVRCLVREYGSLEQSPEKISATVVEIAGYSMSEDVRQRHRYLSHL
P
LTCEFSICELALQPPVVSKETLEMFS
DDIEKRKRQRQKKAREERRRERRIEMEENKRQGRYPEVHIPLE
N
LQQFPAFNSYTCPSDSALGPTSTEGHGALSLSPLSRSPGSHA
DFLLTPLSPTASQGSPSFCVGSLEDDS
P
FLSFAQ
MLRVGKAKADGWPKTAPKKDDNSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLD
T
PATSDPLS
DRGGKKRKRQKQKLLFSTSVVHTK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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