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Report for CCDS80513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80513.1 Public Mus musculus 6 Mest 23 108 98 CCDS HistoryNCBI Gene:17294Re-query CCDS DB by CCDS ID:80513.1Re-query CCDS DB by GeneID:17294See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000157040.7 ENSMUSP00000119038.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000157040.7Link to Ensembl Protein Viewer:ENSMUSP00000119038.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000157040Re-query CCDS DB by Protein ID:ENSMUSP00000119038
Original member Current member NCBI NM_001252293.1 NP_001239222.1 Accepted alive Link to Nucleotide Sequence:NM_001252293.1Link to Protein Sequence:NP_001239222.1Re-query CCDS DB by Nucleotide ID:NM_001252293Re-query CCDS DB by Protein ID:NP_001239222Link to BLAST:NP_001239222.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239222.1 326 Q07646-2 326 100% 0 0

Chromosomal Locations for CCDS 80513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30740671 30740824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30742141 30742220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30742528 30742605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30742716 30742852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30743014 30743072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30744354 30744394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30744862 30744932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30745082 30745183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30745830 30745906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30746262 30746325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30747052 30747169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGAGAGAGTGGTGGGTCCAAGTAGGGCTCCTGGCTGTGCCCTTGCTGGCTGCGTACCTGCACATCCCGC
CCCCTCAGCTCTCCCCTGCTCTGCACTCATGGAAGACTTCTGGCAAGTTTTTCACCTACAAAGGCCTACG
CATCTTCTACCAAGATTCTGTCGGTGTGGTCGGAAGCCCTGAGATAGTTGTGCTTTTACATGGCTTTCCA
ACATCCAGCTATGACTGGTACAAGATCTGGGAAGGGCTGACCCTGAGGTTCCATCGAGTGATCGCCCTTG
ATTTCTTAGGCTTTGGCTTCAGTGACAAGCCGAGACCACATCAGTACTCCATATTTGAGCAGGCCAGCAT
CGTAGAGTCCCTTCTGCGGCACCTGGGGCTCCAGAACCGCAGAATCAACCTGCTGTCTCACGATTATGGA
GATATCGTTGCTCAGGAACTGCTGTACAGGTACAAGCAGAATCGATCTGGCCGGCTCACCATAAAGAGTC
TCTGTCTGTCGAATGGAGGTATCTTTCCTGAGACGCATCGTCCTCTCCTTCTCCAAAAGCTCCTCAAAGA
CGGAGGTGTGCTTTCCCCCATCCTCACCAGGCTCATGAATTTCTTCGTGTTCTCTCGAGGTCTCACTCCA
GTCTTTGGACCGTATACTCGACCCACTGAGAGTGAGCTGTGGGACATGTGGGCTGTGATTCGCAACAATG
ACGGCAACCTGGTCATCGACAGTCTTTTACAGTACATTAATCAAAGGAAGAAATTCAGAAGACGCTGGGT
GGGAGCGCTTGCTTCTGTGTCCATCCCCATTCATTTTATCTATGGGCCATTGGATCCTATAAATCCGTAT
CCAGAGTTTTTGGAGCTGTACAGGAAAACGCTGCCGCGGTCCACAGTGTCGATTCTGGATGACCACATTA
GCCACTACCCACAGCTAGAGGATCCCATGGGCTTCTTGAATGCATATATGGGCTTCATCAACTCCTTCTG
A

Translation (326 aa):
MREWWVQVGLLAVPLLAAYLHIPPPQLSPALHSWKTSGKFFTYKGLRIFYQDSVGVVGSPEIVVLLHGFP
TSSYDWYKIWEGLTLRFHRVIALDFLGFGFSDKPRPHQYSIFEQASIVESLLRHLGLQNRRINLLSHDYG
DIVAQELLYRYKQNRSGRLTIKSLCLSNGGIFPETHRPLLLQKLLKDGGVLSPILTRLMNFFVFSRGLTP
VFGPYTRPTESELWDMWAVIRNNDGNLVIDSLLQYINQRKKFRRRWVGALASVSIPIHFIYGPLDPINPY
PEFLELYRKTLPRSTVSILDDHISHYPQLEDPMGFLNAYMGFINSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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