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Report for CCDS80534.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80534.1 Public Mus musculus 6 Hoxa1 23 108 98 CCDS HistoryNCBI Gene:15394Re-query CCDS DB by CCDS ID:80534.1Re-query CCDS DB by GeneID:15394See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80534.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120363.1 ENSMUSP00000113724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120363.1Link to Ensembl Protein Viewer:ENSMUSP00000113724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120363Re-query CCDS DB by Protein ID:ENSMUSP00000113724
Original member NCBI NM_001311118.1 NP_001298047.1 Updated not alive Link to Nucleotide Sequence:NM_001311118.1Link to Protein Sequence:NP_001298047.1Re-query CCDS DB by Nucleotide ID:NM_001311118Re-query CCDS DB by Protein ID:NP_001298047
Current member NCBI NM_001311118.2 NP_001298047.1 Accepted alive Link to Nucleotide Sequence:NM_001311118.2Link to Protein Sequence:NP_001298047.1Re-query CCDS DB by Nucleotide ID:NM_001311118Re-query CCDS DB by Protein ID:NP_001298047Link to BLAST:NP_001298047.1

Chromosomal Locations for CCDS 80534.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 52157602 52157661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 52157865 52158221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (417 nt):
ATGGACAATGCAAGAATGAACTCCTTTCTGGAATACCCCATCCTTGGCAGTGGCGACTCTGGGACCTGCT
CGGCGCGAGCTTACCCCTCTGACCATGGGATTACAACTTTCCAATCCTGCGCGGTCAGTGCCAACAGCTG
CGGCGGCGACGACCGCTTCCTAGTGGGCAGGGGGGTGCAGATCAGCTCGCCCCACCACCACCACCACCAC
CACCACCATCACCACCCCCAGACGGCTACTTACCAGACTTCTGGAAACCTTGGGATTTCTTATTCCCACT
CGAGTTGTGGTCCAAGCTATGGCGCGCAGAACTTCAGTGCGCCTTATGGCCCCTATGGATTAAATCAGGA
AGCAGACCCACCAAGAAGCCTGTCGTTCCCCTGCTTCAGAGACGTCTTCTCCAGCGCAGACCTTTGA

Translation (138 aa):
MDNARMNSFLEYPILGSGDSGTCSARAYPSDHGITTFQSCAVSANSCGGDDRFLVGRGVQISSPHHHHHH
HHHHHPQTATYQTSGNLGISYSHSSCGPSYGAQNFSAPYGPYGLNQEADPPRSLSFPCFRDVFSSADL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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