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Report for CCDS80740.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80740.1 Public Mus musculus 7 Cib1 23 108 98 CCDS HistoryNCBI Gene:23991Re-query CCDS DB by CCDS ID:80740.1Re-query CCDS DB by GeneID:23991See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80740.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071457.11 ENSMUSP00000071401.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071457.11Link to Ensembl Protein Viewer:ENSMUSP00000071401.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000071457Re-query CCDS DB by Protein ID:ENSMUSP00000071401
Original member NCBI NM_001291276.1 NP_001278205.1 Updated not alive Link to Nucleotide Sequence:NM_001291276.1Link to Protein Sequence:NP_001278205.1Re-query CCDS DB by Nucleotide ID:NM_001291276Re-query CCDS DB by Protein ID:NP_001278205
Current member NCBI NM_001291276.2 NP_001278205.1 Accepted alive Link to Nucleotide Sequence:NM_001291276.2Link to Protein Sequence:NP_001278205.1Re-query CCDS DB by Nucleotide ID:NM_001291276Re-query CCDS DB by Protein ID:NP_001278205Link to BLAST:NP_001278205.1

Chromosomal Locations for CCDS 80740.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 80227365 80227386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80227994 80228082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80228162 80228280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80228398 80228548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 80232510 80232560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGGAGGTTCGGGCAGTCGCCTGTCTAAGGAGCTGCTGGCCGAGTACCAGGCTAACCCTTTCAAGGAGC
GAATCTGCATGGTCTTCTCCACATCACCTACCAGAGACAGCCTGAGCTTTGAGGACTTCCTGGACCTCCT
GAGTGTCTTCAGTGACACAGCAACCCCAGACATCAAGTCACACTATGCCTTCCGCATCTTTGACTTTGAT
GACGATGGAACCCTGGACAGAGAAGACCTGAGCCAGCTTGTGAATTGCCTCACGGGAGAGGGCGAGGACA
CTCGGCTCAGTGCTTCTGAGATGAAGCAGCTGATTGACAATATCCTGGAAGAGTCAGACATTGACAGGGA
TGGGACCATCAATCTTTCCGAGTTCCAGCATGTCATCTCGCGCTCACCAGACTTTGCCAGCTCCTTTAAG
ATTGTCCTGTGA

Translation (143 aa):
MGGSGSRLSKELLAEYQANPFKERICMVFSTSPTRDSLSFEDFLDLLSVFSDTATPDIKSHYAFRIFDFD
DDGTLDREDLSQLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVISRSPDFASSFK
IVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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