NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS80774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80774.1 Public Mus musculus 7 Apbb1 23 108 98 CCDS HistoryNCBI Gene:11785Re-query CCDS DB by CCDS ID:80774.1Re-query CCDS DB by GeneID:11785See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 80774.1
This coding region lacks full-length transcript support. Therefore this CCDS representation has an inferred exon combination based on partial transcripts, RNA-seq alignments and orthologous data.

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 80774.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000187057.6 ENSMUSP00000139899.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187057.6Link to Ensembl Protein Viewer:ENSMUSP00000139899.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187057Re-query CCDS DB by Protein ID:ENSMUSP00000139899
Original member NCBI NM_001310600.1 NP_001297529.1 Updated not alive Link to Nucleotide Sequence:NM_001310600.1Link to Protein Sequence:NP_001297529.1Re-query CCDS DB by Nucleotide ID:NM_001310600Re-query CCDS DB by Protein ID:NP_001297529
Current member NCBI NM_001310600.2 NP_001297529.1 Accepted alive Link to Nucleotide Sequence:NM_001310600.2Link to Protein Sequence:NP_001297529.1Re-query CCDS DB by Nucleotide ID:NM_001310600Re-query CCDS DB by Protein ID:NP_001297529Link to BLAST:NP_001297529.1

Chromosomal Locations for CCDS 80774.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105558883 105559050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105559132 105559308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105559443 105559558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105564972 105565055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105565301 105565385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105565533 105565647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105566051 105566178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105566548 105566697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105567083 105567146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105567254 105567339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105567428 105567484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105567578 105567753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 105568619 105568670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1458 nt):
ATGTTCTCCCAGGACTTCTTCCTGGCTATCATCCTGCAGGACAACAGTCCAGATTCCTTCTGGAACCCCA
ACGCTTTCGAGACGGATTCCGATCTACCGGCTGGATGGATGAGGGTACAGGACACCTCAGGGACCTACTA
CTGGCACATCCCAACAGGGACCACCCAGTGGGAACCCCCAGGCCGGGCCTCCCCCTCACAGGGGAGCAGC
CCCCAAGAAGAGTCCCAGCTCACCTGGACTGGCTTTGCTCACCAAGAAGGCTTTGAGGAAGGAGAGTTTT
GGAAGGATGAACCCAGTGAGGAGGCCCCAATGGAGTTGGGACTGAAGGACCCCGAGGAGGCGACATTGTC
CTTCCCAGCTCAGAGCCTCAGCCCAGAACCAGTTCCCCAGGAGGAAGAGAAGCTGTCCCAACGGAATGCC
AACCCAGGGATCAAGTGTTTCGCTGTGCGCTCCCTAGGCTGGGTAGAGATGACCGAGGAGGAGCTGGCCC
CAGGACGCAGCAGTGTGGCAGTCAACAATTGTATCCGCCAGCTCTCCTACCACAAAAACAATCTACATGA
TCCGATGGCTGGGGGCTGGGGAGAGGGAAAGGATCTGCTGCTCCAGCTGGAGGACGAGACTCTAAAGTTG
GTGGAGCCACAGAACCAGACGCTGCTGCATGCACAGCCCATCGTCAGCATTCGTGTGTGGGGCGTTGGGC
GGGACAGTGGAAGGGACTTTGCCTACGTAGCTCGAGATAAGCTGACCCAGATGCTCAAGTGCCACGTGTT
TCGCTGTGAGGCACCTGCCAAGAACATCGCCACCAGCCTGCATGAGATCTGCTCCAAGATCATGTCTGAA
CGGCGCAATGCTCGCTGCTTGGTCAATGGACTCTCCCTAGACCACTCTAAACTCGTGGATGTCCCTTTCC
AAGTGGAATTCCCAGCACCAAAGAATGAGCTGGTGCAGAAGTTCCAAGTCTATTACCTGGGAAATGTGCC
AGTTGCTAAACCTGTTGGGGTAGACGTGATTAATGGGGCCCTGGAGTCAGTCCTGTCTTCCAGTAGCCGT
GAGCAGTGGACTCCAAGTCACGTCAGCGTGGCCCCTGCCACCCTCACCATCTTGCACCAGCAGACAGAAG
CGGTGCTGGGGGAGTGCCGGGTGCGGTTTCTCTCCTTCCTGGCTGTGGGCAGAGATGTGCACACATTCGC
GTTCATCATGGCTGCCGGCCCAGCCTCCTTCTGCTGTCACATGTTTTGGTGTGAGCCCAATGCTGCCAGT
CTCTCAGAGGCTGTGCAGGCTGCATGCATGCTCCGCTACCAGAAGTGTCTGGATGCTCGCTCCCAGACCT
CCACCTCCTGCCTCCCAGCACCCCCTGCGGAGTCAGTTGCAAGACGTGTAGGGTGGACAGTCCGCAGGGG
TGTTCAGTCGCTGTGGGGTTCCCTCAAGCCCAAACGTCTGGGATCCCAGACCCCATGA

Translation (485 aa):
MFSQDFFLAIILQDNSPDSFWNPNAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRASPSQGSS
PQEESQLTWTGFAHQEGFEEGEFWKDEPSEEAPMELGLKDPEEATLSFPAQSLSPEPVPQEEEKLSQRNA
NPGIKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPMAGGWGEGKDLLLQLEDETLKL
VEPQNQTLLHAQPIVSIRVWGVGRDSGRDFAYVARDKLTQMLKCHVFRCEAPAKNIATSLHEICSKIMSE
RRNARCLVNGLSLDHSKLVDVPFQVEFPAPKNELVQKFQVYYLGNVPVAKPVGVDVINGALESVLSSSSR
EQWTPSHVSVAPATLTILHQQTEAVLGECRVRFLSFLAVGRDVHTFAFIMAAGPASFCCHMFWCEPNAAS
LSEAVQAACMLRYQKCLDARSQTSTSCLPAPPAESVARRVGWTVRRGVQSLWGSLKPKRLGSQTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH