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Report for CCDS80872.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80872.1 Public Mus musculus 8 Sorbs2 23 108 98 CCDS HistoryNCBI Gene:234214Re-query CCDS DB by CCDS ID:80872.1Re-query CCDS DB by GeneID:234214See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80872.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000132139.8 ENSMUSP00000123250.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132139.8Link to Ensembl Protein Viewer:ENSMUSP00000123250.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132139Re-query CCDS DB by Protein ID:ENSMUSP00000123250
Original member Current member NCBI NM_001310707.1 NP_001297636.1 Accepted alive Link to Nucleotide Sequence:NM_001310707.1Link to Protein Sequence:NP_001297636.1Re-query CCDS DB by Nucleotide ID:NM_001310707Re-query CCDS DB by Protein ID:NP_001297636Link to BLAST:NP_001297636.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297636.1 707 Q3UTJ2-5 707 99.8586% 0 1

Chromosomal Locations for CCDS 80872.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45736193 45736202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45741487 45741579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45745420 45745446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45745786 45745841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45759053 45759191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45763019 45763191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45769829 45769895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45770546 45770590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45772534 45772708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45775589 45775703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45782802 45782960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45785269 45785325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45789976 45790025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45792781 45792968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45799710 45799798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45800965 45801011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45803632 45803746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45803833 45803961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45805653 45805853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45819719 45819768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45823759 45823835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45825745 45825806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGAATACAGATAGCGGTGGGTGTGCTCGCAAACGTGCCGCCATGTCTGTTACGTTAACATCTGTGAAGA
GAGTTCAAAGTTCTCCAAACCTATTGGCTGCAGGGCGTGAGTCTCAGTCTCCAGATTCAGCAAAAGGTTT
TAGAAGCGTTCGGCCAAACCTGCAAGACAAAAGATCACCGACCCAGAGCCAGATCACTATCAATGGCAAC
TCTGGTGGCGCCGTGAGTCCAGTGAGTTACTATCAGAGGCCATTCTCCCCTTCTGCATACTCCCTCCCAG
CCTCGCTGAACTCCAGCATTATCATGCAGCACGGCAGGTCTCTTGATTCTGCAGAGACATATTCCCAGCA
TGCCCAGTCCCTGGATGGCACCATGGGAAGCTCCATCCCGCTCTATAGATCCTCCGAGGAAGAGAAGAGG
GTCACGGTCATCAAAGCCCCGCATTACCCAGGGATCGGCCCTGTGGATGAGTCTGGAATCCCCACAGCCA
TTAGGACGACTGTCGACAGGCCAAAGGACTGGTACAAGACAATGTTCAAGCAAATCCACATGGTACACAA
GCCGGATGAGGACACAGACATGTATAATACTCCTTACACATACAACGCAGGTCTGTACAACTCGCCCTAC
AGTGCTCAGTCCCACCCGGCTGCGAAGACTCAGACCTACAGACCTCTTTCGAAAAGCCACTCAGACAATG
GCACCGATGCGTTTAAGGAGGTGCCCTCCCCAGTGCCTCCCCCACACGTCCCACCACGACCAAGAGATCA
GTCTTCAACACTAAAGCATGACTGGGACCCTCCAGACAGAAAGGTGGACACCAGGAAATTTCGATCGGAG
CCAAGGAGTATTTTTGAATATGAGCCTGGGAAGTCGTCCATTCTGCAGCACGAAAGACCCCCCCCTCTCC
CACCAACTCCGACACCTGTTCCCAGGGAACCCAGCCGGAAGCCTCTCTCAGTGTCACCCTCAACAGATGG
CCTGCGTAGCCCTTCCCCTCCGCCCAGGAGCTGTGTCCCCGCACCCCGTCCGAGTGCCCCAGATCTCTCT
CCCACCCGGCCTCCTAAAAAGGCTCTGGATTATGTTCAAGATCATTCTTCCGGTGTGTCCAACGAGGTCT
CCATCTATCAGTCCTCCATAGACAGAAGCCTGGAAAGACCCAGCAGCTCTGCAAGCATGGCCGGTGACTT
TAGGAAACGGAGGAAGAGCGAACCTGCAGTGGGCCCACTCCGGGGCTTGGGGGATCAGAGTTCAAGCAGG
ACCAGCCCTGGCCGGGCGGACCTCCCAGGATCAAGTTCCACCTTTACGAAGTCTTTCATTAGCTCTTCTC
CTTCCTCTCCCTCGAGAGCACAAGATCACGAGTCCCCTAGAAGTTACTCATCTACTCTGACTGACTTGGG
CAGAAGTGCATCACGGGAACGAAGGGGAACTCCAGAAAAAGAGAAATTGCCTGCAAAAGCTGTCTATGAT
TTCAAAGCTCAGACATCTAAGGAGCTGTCATTTAAGAAAGGAGACACTGTCTACATCCTCAGGAAAATTG
ACCAAAACTGGTATGAGGGGGAACACCACGGCAGAGTGGGCATTTTCCCAATCTCATACGTAGAGAAACT
AACACCCCCGGAAAAAGCGCAGCCCGCAAGACCACCACCCCCAGTCCAGCCCGGAGAGATTGGAGAAGCC
ATAGCCAAGTACAACTTCAATGCAGACACAAATGTGGAACTCTCCCTGCGAAAGGGCGACAGGATTATTC
TTCTTAAAAGAGTTGACCAAAACTGGTACGAAGGTAAAATCCCAGGAACCAACAGACAAGGCATCTTCCC
CGTGTCCTATGTCGAGGTTGTCAAGAGGAACGCAAAAGGTGCTGAGGACTACCCAGACCCTCCTCTGCCC
CACAGCTACTCCAGTGACAGAATTTACACCCTAAGCTCCAATAAGCCACAGCGTCCTGGGTTCTCTCATG
AAAACATTCAAGGTGGGGGAGAACCGAACGAAGATGAGCTGGAACTCAGAGAAAGTGATGTCGTTGATGT
CATGGAAAAGTGTGACGACGGATGGTTTGTGGGAACTTCAAGAAGAACCAAATTCTTTGGTACTTTTCCC
GGAAACTATGTCAAAAGGCTGTGA

Translation (707 aa):
MNTDSGGCARKRAAMSVTLTSVKRVQSSPNLLAAGRESQSPDSAKGFRSVRPNLQDKRSPTQSQITINGN
SGGAVSPVSYYQRPFSPSAYSLPASLNSSIIMQHGRSLDSAETYSQHAQSLDGTMGSSIPLYRSSEEEKR
VTVIKAPHYPGIGPVDESGIPTAIRTTVDRPKDWYKTMFKQIHMVHKPDEDTDMYNTPYTYNAGLYNSPY
SAQSHPAAKTQTYRPLSKSHSDNGTDAFKEVPSPVPPPHVPPRPRDQSSTLKHDWDPPDRKVDTRKFRSE
PRSIFEYEPGKSSILQHERPPPLPPTPTPVPREPSRKPLSVSPSTDGLRSPSPPPRSCVPAPRPSAPDLS
PTRPPKKALDYVQDHSSGVSNEVSIYQSSIDRSLERPSSSASMAGDFRKRRKSEPAVGPLRGLGDQSSSR
TSPGRADLPGSSSTFTKSFISSSPSSPSRAQDHESPRSYSSTLTDLGRSASRERRGTPEKEKLPAKAVYD
FKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPVQPGEIGEA
IAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKRNAKGAEDYPDPPLP
HSYSSDRIYTLSSNKPQRPGFSHENIQGGGEPNEDELELRESDVVDVMEKCDDGWFVGTSRRTKFFGTFP
GNYVKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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