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Report for CCDS80874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80874.1 Public Mus musculus 8 Sorbs2 23 108 98 CCDS HistoryNCBI Gene:234214Re-query CCDS DB by CCDS ID:80874.1Re-query CCDS DB by GeneID:234214See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80874.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130011.7 ENSMUSP00000121619.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130011.7Link to Ensembl Protein Viewer:ENSMUSP00000121619.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130011Re-query CCDS DB by Protein ID:ENSMUSP00000121619
Original member Current member NCBI NM_001310708.1 NP_001297637.1 Accepted alive Link to Nucleotide Sequence:NM_001310708.1Link to Protein Sequence:NP_001297637.1Re-query CCDS DB by Nucleotide ID:NM_001310708Re-query CCDS DB by Protein ID:NP_001297637Link to BLAST:NP_001297637.1

Chromosomal Locations for CCDS 80874.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45736193 45736202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45745420 45745446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45745786 45745841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45759053 45759191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45763019 45763191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45769829 45769895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45772534 45772708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45775589 45775703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45782802 45782960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45789976 45790025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45792781 45792968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45799710 45799798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45800965 45801011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45803632 45803746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45803833 45803961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45805653 45805853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45819719 45819768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45823729 45823835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45825745 45825806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGAATACAGGGCGTGAGTCTCAGTCTCCAGATTCAGCAAAAGGTTTTAGAAGCGTTCGGCCAAACCTGC
AAGACAAAAGATCACCGACCCAGAGCCAGATCACTATCAATGGCAACTCTGGTGGCGCCGTGAGTCCAGT
GAGTTACTATCAGAGGCCATTCTCCCCTTCTGCATACTCCCTCCCAGCCTCGCTGAACTCCAGCATTATC
ATGCAGCACGGCAGGTCTCTTGATTCTGCAGAGACATATTCCCAGCATGCCCAGTCCCTGGATGGCACCA
TGGGAAGCTCCATCCCGCTCTATAGATCCTCCGAGGAAGAGAAGAGGGTCACGGTCATCAAAGCCCCGCA
TTACCCAGGGATCGGCCCTGTGGATGAGTCTGGAATCCCCACAGCCATTAGGACGACTGTCGACAGGCCA
AAGGACTGGTACAAGACAATGTTCAAGCAAATCCACATGGTACACAAGCCGGGTCTGTACAACTCGCCCT
ACAGTGCTCAGTCCCACCCGGCTGCGAAGACTCAGACCTACAGACCTCTTTCGAAAAGCCACTCAGACAA
TGGCACCGATGCGTTTAAGGAGGTGCCCTCCCCAGTGCCTCCCCCACACGTCCCACCACGACCAAGAGAT
CAGTCTTCAACACTAAAGCATGACTGGGACCCTCCAGACAGAAAGGTGGACACCAGGAAATTTCGATCGG
AGCCAAGGAGTATTTTTGAATATGAGCCTGGGAAGTCGTCCATTCTGCAGCACGAAAGACCCCCCCCTCT
CCCACCAACTCCGACACCTGTTCCCAGGGAACCCAGCCGGAAGCCTCTCTCAGTGTCACCCTCAACAGAT
GGCCTGCGTAGCCCTTCCCCTCCGCCCAGGAGCTGTGTCCCCGCACCCCGTCCGAGTGCCCCAGATCTCT
CTCCCACCCGGGTCTCCATCTATCAGTCCTCCATAGACAGAAGCCTGGAAAGACCCAGCAGCTCTGCAAG
CATGGCCGGTGACTTTAGGAAACGGAGGAAGAGCGAACCTGCAGTGGGCCCACTCCGGGGCTTGGGGGAT
CAGAGTTCAAGCAGGACCAGCCCTGGCCGGGCGGACCTCCCAGGATCAAGTTCCACCTTTACGAAGTCTT
TCATTAGCTCTTCTCCTTCCTCTCCCTCGAGAGCACAAGATCACGAGTCCCCTAGAAGTTACTCATCTAC
TCTGACTGACTTGGGCAGAAGTGCATCACGGGAACGAAGGGGAACTCCAGAAAAAGAGAAATTGCCTGCA
AAAGCTGTCTATGATTTCAAAGCTCAGACATCTAAGGAGCTGTCATTTAAGAAAGGAGACACTGTCTACA
TCCTCAGGAAAATTGACCAAAACTGGTATGAGGGGGAACACCACGGCAGAGTGGGCATTTTCCCAATCTC
ATACGTAGAGAAACTAACACCCCCGGAAAAAGCGCAGCCCGCAAGACCACCACCCCCAGTCCAGCCCGGA
GAGATTGGAGAAGCCATAGCCAAGTACAACTTCAATGCAGACACAAATGTGGAACTCTCCCTGCGAAAGG
GCGACAGGATTATTCTTCTTAAAAGAGTTGACCAAAACTGGTACGAAGGTAAAATCCCAGGAACCAACAG
ACAAGGCATCTTCCCCGTGTCCTATGTCGAGGTTGTCAAGAGGAACGCAAAAGGTGCTGAGGACTACCCA
GACCCTCCTCTGCCCCACAGCTACTCCAGTGACAGAATTTACACCCTAAGCTCCAATAAGCCACAGCGTC
CTGGGTTCTCTCATGAAAACATTCAAGGTGGGGGAGAACCGTTTCAGGCTCTGTATAACTATACTCCTAG
GAACGAAGATGAGCTGGAACTCAGAGAAAGTGATGTCGTTGATGTCATGGAAAAGTGTGACGACGGATGG
TTTGTGGGAACTTCAAGAAGAACCAAATTCTTTGGTACTTTTCCCGGAAACTATGTCAAAAGGCTGTGA

Translation (652 aa):
MNTGRESQSPDSAKGFRSVRPNLQDKRSPTQSQITINGNSGGAVSPVSYYQRPFSPSAYSLPASLNSSII
MQHGRSLDSAETYSQHAQSLDGTMGSSIPLYRSSEEEKRVTVIKAPHYPGIGPVDESGIPTAIRTTVDRP
KDWYKTMFKQIHMVHKPGLYNSPYSAQSHPAAKTQTYRPLSKSHSDNGTDAFKEVPSPVPPPHVPPRPRD
QSSTLKHDWDPPDRKVDTRKFRSEPRSIFEYEPGKSSILQHERPPPLPPTPTPVPREPSRKPLSVSPSTD
GLRSPSPPPRSCVPAPRPSAPDLSPTRVSIYQSSIDRSLERPSSSASMAGDFRKRRKSEPAVGPLRGLGD
QSSSRTSPGRADLPGSSSTFTKSFISSSPSSPSRAQDHESPRSYSSTLTDLGRSASRERRGTPEKEKLPA
KAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYVEKLTPPEKAQPARPPPPVQPG
EIGEAIAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGKIPGTNRQGIFPVSYVEVVKRNAKGAEDYP
DPPLPHSYSSDRIYTLSSNKPQRPGFSHENIQGGGEPFQALYNYTPRNEDELELRESDVVDVMEKCDDGW
FVGTSRRTKFFGTFPGNYVKRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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