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Report for CCDS80964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80964.1 Public Mus musculus 9 Pde4a 23 108 98 CCDS HistoryNCBI Gene:18577Re-query CCDS DB by CCDS ID:80964.1Re-query CCDS DB by GeneID:18577See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115458.8 ENSMUSP00000111118.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115458.8Link to Ensembl Protein Viewer:ENSMUSP00000111118.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115458Re-query CCDS DB by Protein ID:ENSMUSP00000111118
Original member NCBI NM_001310750.1 NP_001297679.1 Updated not alive Link to Nucleotide Sequence:NM_001310750.1Link to Protein Sequence:NP_001297679.1Re-query CCDS DB by Nucleotide ID:NM_001310750Re-query CCDS DB by Protein ID:NP_001297679
Current member NCBI NM_001310750.2 NP_001297679.1 Accepted alive Link to Nucleotide Sequence:NM_001310750.2Link to Protein Sequence:NP_001297679.1Re-query CCDS DB by Nucleotide ID:NM_001310750Re-query CCDS DB by Protein ID:NP_001297679Link to BLAST:NP_001297679.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297679.1 787 O89084-3 787 100% 0 0

Chromosomal Locations for CCDS 80964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21184418 21184551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21191327 21191518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21192395 21192431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21192520 21192590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21194575 21194624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21194746 21194858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21198593 21198686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21201221 21201417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21203198 21203296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21203388 21203552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21204324 21204423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21204970 21205124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21205291 21205413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21206145 21206327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 21210694 21211344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2364 nt):
ATGCGCTCCAGTGCAGCACCCCGGGCCCGGCCCCGACCCCCAGCCTTGGCATTGCCCCTAGGACCGGAGT
CATTGACCCATTTCTCCTTCAGCGAGGAGGACACTCTTCGACACCCTCCGGGCAGATGTGTCAGCTTGGA
GGCAGAAAATGGGCCAACACCGTCCCCTGGCCGCAGCCCCCTGGACTCGCAGGCGAGCCCGGGGCTTATG
CTGCATGCCGGGGCAGCCACCAGCCAGCGCCGAGAATCCTTCCTCTATCGCTCAGACAGCGACTATGACA
TGTCACCGAAGACTATGTCCAGGAACTCATCCGTCGCCAGCGAAGCGCATGGTGAAGACCTCATTGTGAC
CCCGTTTGCCCAGGTGCTGGCCAGTCTCCGCAACGTTCGAAGCAACTTCTCACTCCTAACCAATGTGCCC
ATCCCCAGCAACAAGAGGTCCCCGCTGGGCGGGCCACCCTCTGTCTGCAAGGCCACACTGTCAGAGGAGA
CATGCCAGCAGCTGGCCCGGGAGACCCTGGAAGAGCTGGATTGGTGCCTGGAGCAGCTGGAGACCATGCA
GACCTACCGCTCTGTCAGCGAGATGGCCTCACACAAGTTTAAAAGGATGCTGAACCGGGAACTCACACAC
CTGTCGGAAATGAGCAGGTCAGGAAACCAGGTCTCAGAGTACATTTCCAACACGTTCCTAGACAAGCAGC
ACGAAGTGGAGATCCCATCGCCCACGCCGCGACAGAGACCCTTCCAGCAGCCCCCACCAGCAGCAGTGCA
GCAGGCCCAGCCCATGTCTCAGATCACAGGGCTGAAAAAGCTGGTACACACCGGAAGCTTGAACATCAAT
GTCCCACGATTTGGAGTCAAGACAGATCAGGAGGACCTCTTAGCACAAGAACTGGAGAACTTGAGCAAAT
GGGGCCTGAACATCTTTTGTGTGTCGGAGTACGCTGGAGGCCGTTCACTCAGCTGTATCATGTATACGAT
ATTCCAGGAGCGGGACTTACTGAAGAAATTCCACATCCCCGTGGACACCATGATGACATACATGCTGACG
CTGGAGGACCACTACCACGCTGACGTGGCCTACCACAACAGCCTGCACGCAGCCGATGTGCTACAGTCCA
CACATGTGCTGCTGGCCACGCCTGCACTGGATGCCGTGTTCACAGACCTGGAGATTCTTGCTGCTCTCTT
CGCTGCTGCCATCCATGACGTGGACCACCCTGGCGTCTCCAACCAGTTCCTAATCAACACCAATTCGGAG
CTGGCATTGATGTACAACGATGAGTCTGTGCTTGAGAACCACCACCTGGCTGTGGGATTCAAGCTGCTGC
AAGAAGAGAACTGCGACATCTTCCAGAACCTCAGCAAGCGCCAGCGGCAGAGCCTGCGCAAGATGGTCAT
CGACATGGTGCTGGCCACAGACATGTCCAAGCACATGACCCTTCTGGCTGACCTGAAGACTATGGTAGAG
ACGAAGAAAGTGACCAGCTCTGGAGTTCTCTTGCTGGACAACTACTCTGACCGTATCCAGGTCCTCAGGA
ACATGGTGCACTGTGCAGACCTCAGCAATCCCACCAAGCCCCTGGAGCTGTACCGACAATGGACTGATCG
CATCATGGCTGAGTTCTTCCAGCAGGGTGACCGAGAACGGGAACGCGGAATGGAGATTAGCCCCATGTGT
GACAAGCACACAGCCTCTGTGGAGAAGTCTCAGGTGGGCTTCATCGACTATATTGTTCACCCACTGTGGG
AGACGTGGGCCGATCTCGTCCACCCCGATGCCCAAGACATCCTGGACACGCTGGAAGACAACCGGGATTG
GTATCACAGTGCCATCCGCCAGAGTCCCTCCCCAACCCTGGAAGAGGAGCCAGGAGTGCTCAGCGATCCG
GCCCTGCCTGACAAGTTCCAATTTGAGCTCACCTTGGAGGAAGAGGATGAAGAGGATTCATTGGAGGTTC
CAGGATTGCCTTGCACTGAGGAAACTCTCCTGGCTCCACATGATACCAGAGCTCAAGCCATGGAACAGTC
AAAGGTCAAAGGCCAGAGCCCTGCTGTTGTGGAGGTAGCAGAGAGTTTGAAGCAGGAGACAGCCTCAGCA
CATGGCGCTCCTGAGGAGTCCGCGGAGGCTGTGGGCCATTCCTTCAGCCTTGAAACCTCTATTCTGCCTG
ACTTGAGGACCCTGTCCCCCTCAGAGGAGGCCCAGGGCCTCCTGGGCCTCCCCTCCATGGCGGCAGAGGT
GGAGGCCCCAAGAGACCATCTGGCTGCCATGAGGGCTTGTTCTGCCTGCTCGGGGACATCAGGAGACAAT
TCTGCCGTCATCTCTGCTCCAGGCAGGTGGGGGTCAGGTGGAGACCCTGCCTGA

Translation (787 aa):
MRSSAAPRARPRPPALALPLGPESLTHFSFSEEDTLRHPPGRCVSLEAENGPTPSPGRSPLDSQASPGLM
LHAGAATSQRRESFLYRSDSDYDMSPKTMSRNSSVASEAHGEDLIVTPFAQVLASLRNVRSNFSLLTNVP
IPSNKRSPLGGPPSVCKATLSEETCQQLARETLEELDWCLEQLETMQTYRSVSEMASHKFKRMLNRELTH
LSEMSRSGNQVSEYISNTFLDKQHEVEIPSPTPRQRPFQQPPPAAVQQAQPMSQITGLKKLVHTGSLNIN
VPRFGVKTDQEDLLAQELENLSKWGLNIFCVSEYAGGRSLSCIMYTIFQERDLLKKFHIPVDTMMTYMLT
LEDHYHADVAYHNSLHAADVLQSTHVLLATPALDAVFTDLEILAALFAAAIHDVDHPGVSNQFLINTNSE
LALMYNDESVLENHHLAVGFKLLQEENCDIFQNLSKRQRQSLRKMVIDMVLATDMSKHMTLLADLKTMVE
TKKVTSSGVLLLDNYSDRIQVLRNMVHCADLSNPTKPLELYRQWTDRIMAEFFQQGDRERERGMEISPMC
DKHTASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNRDWYHSAIRQSPSPTLEEEPGVLSDP
ALPDKFQFELTLEEEDEEDSLEVPGLPCTEETLLAPHDTRAQAMEQSKVKGQSPAVVEVAESLKQETASA
HGAPEESAEAVGHSFSLETSILPDLRTLSPSEEAQGLLGLPSMAAEVEAPRDHLAAMRACSACSGTSGDN
SAVISAPGRWGSGGDPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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