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Report for CCDS80989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
80989.1 Public Mus musculus 9 Apoc3 23 108 98 CCDS HistoryNCBI Gene:11814Re-query CCDS DB by CCDS ID:80989.1Re-query CCDS DB by GeneID:11814See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 80989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121916.7 ENSMUSP00000113126.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121916.7Link to Ensembl Protein Viewer:ENSMUSP00000113126.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121916Re-query CCDS DB by Protein ID:ENSMUSP00000113126
Original member Current member NCBI NM_001289755.1 NP_001276684.1 Accepted alive Link to Nucleotide Sequence:NM_001289755.1Link to Protein Sequence:NP_001276684.1Re-query CCDS DB by Nucleotide ID:NM_001289755Re-query CCDS DB by Protein ID:NP_001276684Link to BLAST:NP_001276684.1

Chromosomal Locations for CCDS 80989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 46233223 46233343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46234417 46234540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46234659 46234726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46235155 46235255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGCCCCTGGGGAGGAGAGGAAGGAAGGGAAGAAACAAAGAGCTGGAGGGAGAAGCTCTCACCACCCAGC
CATCTAGCCCACAGAAGGCTTGGGACTCATGGTACGTAGGTGCCATGCAGCCCCGGACGCTCCTCACTGT
GGCCCTCTTGGCTCTCCTGGCATCTGCCCGAGCTGAAGAGGTAGAGGGATCCTTGCTGCTGGGCTCTGTA
CAGGGCTACATGGAACAAGCCTCCAAGACGGTCCAGGATGCGCTAAGTAGCGTGCAGGAGTCCGATATAG
CTGTGGTGGCCAGGGGCTGGATGGACAATCACTTCAGATCCCTGAAAGGCTACTGGAGCAAGTTTACTGA
CAAGTTCACCGGCTTCTGGGATTCTAACCCTGAGGACCAACCAACTCCAGCTATTGAGTCGTGA

Translation (137 aa):
MPLGRRGRKGRNKELEGEALTTQPSSPQKAWDSWYVGAMQPRTLLTVALLALLASARAEEVEGSLLLGSV
QGYMEQASKTVQDALSSVQESDIAVVARGWMDNHFRSLKGYWSKFTDKFTGFWDSNPEDQPTPAIES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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