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Report for CCDS81048.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81048.1 Public Mus musculus 9 Syncrip 23 108 98 CCDS HistoryNCBI Gene:56403Re-query CCDS DB by CCDS ID:81048.1Re-query CCDS DB by GeneID:56403See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81048.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000174391.7 ENSMUSP00000134342.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000174391.7Link to Ensembl Protein Viewer:ENSMUSP00000134342.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000174391Re-query CCDS DB by Protein ID:ENSMUSP00000134342
Original member Current member NCBI NM_001311113.1 NP_001298042.1 Accepted alive Link to Nucleotide Sequence:NM_001311113.1Link to Protein Sequence:NP_001298042.1Re-query CCDS DB by Nucleotide ID:NM_001311113Re-query CCDS DB by Protein ID:NP_001298042Link to BLAST:NP_001298042.1

Chromosomal Locations for CCDS 81048.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 88454254 88454295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88456363 88456729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88461670 88461791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88462236 88462385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88462955 88463160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88464648 88464783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88476789 88476965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88477074 88477187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 88479571 88479651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGAAGACTTACAGGCAGAGAGAAAAACAGGGGACCAAAGTAGCAGACTCTAGTAAAGGACCAGATGAGG
CAAAGATTAAGGCACTTTTGGAAAGAACAGGCTACACACTTGATGTGACTACAGGTCAGAGGAAGTATGG
AGGACCACCTCCAGATTCCGTTTATTCAGGTCAGCAGCCTTCTGTTGGCACTGAGATATTTGTGGGGAAG
ATCCCCAGAGATCTGTTTGAGGATGAGCTTGTTCCATTATTTGAGAAAGCTGGACCTATATGGGATCTTC
GTTTAATGATGGATCCGCTCACTGGTCTCAACAGAGGTTATGCGTTTGTCACTTTTTGTACAAAAGAAGC
AGCACAAGAGGCTGTTAAACTGTATAATAATCATGAAATTCGTTCCGGGAAGCACATTGGTGTCTGCATC
TCAGTTGCCAACAATAGGCTTTTTGTGGGCTCGATTCCTAAGAGTAAAACCAAGGAGCAGATTCTTGAGG
AATTTAGCAAAGTGACAGAGGGTCTCACAGATGTCATTTTATACCACCAACCTGATGACAAGAAAAAAAA
CAGAGGCTTTTGCTTTCTTGAATATGAAGATCACAAAACAGCTGCCCAGGCAAGACGTAGGCTAATGAGT
GGTAAAGTCAAAGTCTGGGGAAATGTTGGAACTGTTGAGTGGGCTGATCCTATTGAAGATCCTGATCCTG
AAGTTATGGCAAAGGTAAAAGTGCTGTTTGTACGCAACCTTGCCAACACGGTAACAGAAGAAATTTTAGA
AAAGTCATTTAGTCAGTTTGGGAAACTGGAACGAGTAAAGAAGCTAAAAGATTATGCTTTCATTCATTTT
GATGAGAGAGATGGTGCTGTCAAGGCTATGGAAGAAATGAATGGTAAAGACTTGGAGGGAGAAAATATTG
AAATTGTTTTTGCTAAGCCACCAGATCAGAAGAGGAAAGAAAGAAAAGCTCAGAGGCAAGCAGCAAAGAA
TCAAATGTATGATGATTACTACTATTATGGTCCACCTCATATGCCTCCCCCAACAAGAGGTCGAGGGCGT
GGAGGTAGAGGTGGCTATGGATATCCTCCAGATTATTATGGATACGAAGATTATTATGATTATTATGGTT
ATGATTACCATAACTATCGTGGTGGATATGAAGATCCATACTATGGTTATGAAGATTTTCAAGTTGGAGC
TAGAGGAAGGGGTGGTAGAGGAGCAAGGGGTGCTGCTCCATCCAGAGGTCGTGGGGCTGCTCCTCCCCGT
GGTAGAGCCGGTTATTCACAGAGAGGAGGCCCTGGATCAGCAAGAGGCGTTCGCGGTGCGAGAGGAGGTG
CCCAACAACAAAGAGGCCGCGGGCAGGGAAAAGGGGTCGAGGCCGGTCCTGACCTGTTACAATGA

Translation (464 aa):
MKTYRQREKQGTKVADSSKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGK
IPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCI
SVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMS
GKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERVKKLKDYAFIHF
DERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGPPHMPPPTRGRGR
GGRGGYGYPPDYYGYEDYYDYYGYDYHNYRGGYEDPYYGYEDFQVGARGRGGRGARGAAPSRGRGAAPPR
GRAGYSQRGGPGSARGVRGARGGAQQQRGRGQGKGVEAGPDLLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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