NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS81102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81102.1 Public Mus musculus X Kdm6a 23 108 98 CCDS HistoryNCBI Gene:22289Re-query CCDS DB by CCDS ID:81102.1Re-query CCDS DB by GeneID:22289See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044484.12 ENSMUSP00000045862.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044484.12Link to Ensembl Protein Viewer:ENSMUSP00000045862.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000044484Re-query CCDS DB by Protein ID:ENSMUSP00000045862
Original member NCBI NM_001310444.1 NP_001297373.1 Updated not alive Link to Nucleotide Sequence:NM_001310444.1Link to Protein Sequence:NP_001297373.1Re-query CCDS DB by Nucleotide ID:NM_001310444Re-query CCDS DB by Protein ID:NP_001297373
Current member NCBI NM_001310444.2 NP_001297373.1 Accepted alive Link to Nucleotide Sequence:NM_001310444.2Link to Protein Sequence:NP_001297373.1Re-query CCDS DB by Nucleotide ID:NM_001310444Re-query CCDS DB by Protein ID:NP_001297373Link to BLAST:NP_001297373.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297373.1 1401 O70546-1 1401 100% 0 0

Chromosomal Locations for CCDS 81102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 18163006 18163172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18163384 18163447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18199158 18199266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18208736 18208785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18216938 18216996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18222757 18222877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18233860 18233914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18236661 18236695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18238841 18238934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18241702 18241828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18245966 18246064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18246197 18246416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18246975 18247109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18248270 18248359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18249753 18249854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18250707 18251102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18254004 18254782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18257836 18257965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18261523 18261628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18262230 18262435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18263948 18264012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18264086 18264160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18264562 18264710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18269148 18269262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18271845 18272032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18272948 18273089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18275035 18275161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18277376 18277546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 18278626 18278655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4206 nt):
ATGAAATCCTGCGGAGTGTCGCTCGCTACCGCCGCCGCCGCCGCCGCCGCCGCCGCTTTCGGTGATGAGG
AAAAGAAAATGGCGGCGGGAAAAGCGAGCGGCGAGAGCGAGGAGGCGTCCCCCAGCCTGACAGCGGAGGA
GAGGGAGGCGCTCGGCGGACTGGACAGCCGCCTTTTCGGGTTCGTGAGGTTTCATGAAGATGGCGCCAGG
ATGAAGGCCCTGCTGGGCAAGGCTGTTCGCTGCTACGAATCTCTAATCTTAAAAGCTGAAGGGAAAGTGG
AGTCTGATTTCTTTTGTCAATTAGGTCACTTCAACCTCTTATTGGAAGATTATCCAAAAGCATTATCTGC
ATACCAGAGGTACTACAGTTTACAGTCTGATTACTGGAAGAATGCTGCCTTTTTATATGGTCTTGGTTTG
GTCTACTTCCATTACAATGCATTTCAGTGGGCTATTAAAGCATTTCAGGAGGTGCTTTATGTCGATCCCA
GCTTTTGTCGAGCCAAGGAAATTCATTTACGACTTGGGCTTATGTTCAAAGTGAACACAGACTATGAGTC
TAGTTTAAAGCATTTTCAGTTAGCTTTGGTTGACTGTAATCCCTGCACTTTGTCCAATGCTGAAATTCAG
TTTCACATTGCCCACTTATATGAAACCCAGAGGAAGTATCATTCTGCAAAAGAAGCTTATGAGCAACTTT
TGCAGACAGAAAACCTTTCTGCACAAGTAAAAGCAACTATTTTACAACAATTAGGTTGGATGCATCACAC
TGTGGATCTCCTGGGAGATAAGGCCACCAAGGAAAGTTATGCTATTCAGTATCTCCAGAAGTCCTTGGAA
GCAGATCCAAATTCTGGCCAGTCCTGGTATTTCCTTGGAAGGTGCTATTCAAGTATTGGGAAAGTTCAGG
ATGCCTTTATATCTTACAGGCAATCTATTGATAAATCAGAAGCAAGTGCAGATACATGGTGTTCAATAGG
TGTGCTCTATCAACAGCAAAATCAGCCTATGGATGCTTTGCAAGCTTATATTTGTGCTGTACAATTGGAC
CACGGTCATGCTGCAGCCTGGATGGATCTAGGCACTCTCTATGAATCCTGCAACCAACCTCAGGATGCTA
TTAAATGCTATTTAAATGCAACTAGAAGCAAAAATTGTAGTAATACCTCTGGACTTGCAGCACGAATTAA
GTATTTACAGGCTCAGTTGTGTAACCTTCCACAAGGTAGTCTACAGAATAAAACTAAATTACTTCCTAGT
ATTGAGGAGGCATGGAGCCTACCAATCCCCGCAGAGCTTACCTCCAGGCAGGGTGCCATGAACACAGCAC
AGCAGAATACTTCTGATAATTGGAGTGGTGGCAATGCACCACCTCCAGTAGAACAACAAACTCATTCATG
GTGTTTGACACCACAGAAATTACAGCACTTGGAACAGCTCCGAGCAAACAGAAATAATTTAAATCCAGCA
CAGAAACTAATGCTGGAACAGCTGGAAAGTCAGTTTGTCTTAATGCAGCAACACCAAATGAGACAAACAG
GAGTTGCACAGGTACGGCCTACTGGAATTCTTAATGGGCCAACAGTTGACTCATCACTGCCTACAAACTC
AGTTTCTGGCCAGCAGCCACAGCTTCCTCTGACCAGAATGCCTAGTGTCTCTCAGCCTGGAGTCCACACT
GCCTGTCCTAGGCAGACTTTGGCCAATGGACCCTTTTCTGCAGGCCATGTTCCCTGTAGCACATCAAGAA
CACTGGGAAGTACAGACACTGTTTTGATAGGCAATAATCATGTAACAGGAAGTGGAAGTAATGGAAACGT
GCCTTACCTGCAGCGAAACGCACCCACTCTACCTCATAACCGCACAAACCTGACCAGCAGCACAGAGGAG
CCGTGGAAAAACCAACTATCTAACTCCACTCAGGGGCTTCACAAAGGTCCGAGTTCACATTTGGCAGGTC
CTAATGGTGAACGACCTCTATCTTCCACTGGGCCTTCCCAGCATCTCCAGGCAGCTGGCTCTGGTATTCA
GAATCAGAATGGACATCCCACCCTGCCTAGCAATTCAGTAACACAGGGGGCTGCTCTCAATCACCTCTCC
TCTCACACTGCTACCTCAGGTGGACAACAAGGCATTACCTTAACCAAAGAGAGCAAGCCTTCAGGAAACA
CATTGACGGTGCCTGAAACAAGCAGGCAAACTGGAGAGACACCTAACAGCACTGCCAGTGTTGAGGGACT
TCCTAATCATGTCCATCAGGTGATGGCAGATGCTGTTTGCAGTCCTAGCCATGGAGATTCTAAGTCACCA
GGTTTACTAAGTTCAGACAATCCTCAGCTCTCTGCCTTGTTGATGGGAAAAGCTAATAACAATGTGGGTC
CTGGAACCTGTGACAAAGTCAATAACATCCACCCAACTGTCCATACAAAGACTGATAATTCTGTTGCCTC
TTCACCATCTTCAGCCATTTCCACAGCAACACCTTCTCCTAAGTCCACTGAACAGACAACCACAAACAGT
GTTACCAGCCTTAACAGCCCTCACAGTGGGCTGCACACAATTAATGGAGAAGGAATGGAAGAATCTCAGA
GCCCCATTAAAACAGATCTGCTTCTAGTTAGCCACAGACCTAGTCCTCAGATCATACCATCAATGTCTGT
GTCCATATATCCCAGCTCAGCAGAAGTTCTGAAAGCTTGCAGGAATCTAGGTAAAAACGGCCTGTCTAAT
AGTAGCATTCTGTTGGATAAATGTCCGCCTCCAAGACCACCATCCTCACCATACCCTCCCTTGCCAAAGG
ACAAGTTGAATCCACCTACACCTAGTATTTATTTGGAAAATAAACGTGATGCTTTCTTTCCTCCATTACA
TCAATTTTGTACAAACCCAAACAACCCTGTTACAGTAATACGTGGCCTTGCTGGAGCTCTTAAATTAGAC
TTGGGACTTTTCTCTACTAAAACTTTGGTGGAAGCTAACAATGAACATATGGTAGAAGTGAGGACACAGT
TGTTACAACCAGCAGATGAAAATTGGGACCCTACTGGAACCAAGAAAATCTGGCACTGTGAAAGTAATAG
ATCTCATACTACAATTGCTAAATATGCTCAGTACCAGGCCTCCTCATTCCAAGAATCATTGAGAGAAGAA
AATGAGAAAAGAAGTCACCATAAAGACCACTCAGACAGTGAATCTACATCATCAGATAATTCTGGGAAAA
GAAGAAAAGGACCCTTTAAAACCATTAAGTTTGGGACCAACATTGACCTGTCTGATGACAAAAAGTGGAA
GTTACAGCTACATGAGCTGACTAAACTTCCTGCCTTCGTGAGAGTTGTATCTGCAGGAAATCTTTTAAGC
CACGTTGGTCATACTATACTGGGCATGAACACAGTTCAACTATACATGAAAGTTCCAGGAAGCAGAACAC
CAGGTCATCAAGAAAATAACAACTTCTGTTCAGTTAATATAAATATTGGCCCAGGTGACTGTGAATGGTT
TGTTGTTCCTGAAGGCTACTGGGGTGTTTTGAATGACTTCTGTGAAAAAAATAATTTGAATTTCTTAATG
GGTTCTTGGTGGCCCAACCTTGAAGATCTATATGAAGCAAATGTTCCAGTGTATAGGTTTATTCAGCGAC
CTGGAGATCTGGTCTGGATAAATGCTGGCACTGTTCATTGGGTTCAAGCTATTGGCTGGTGCAACAATAT
TGCTTGGAATGTTGGTCCACTTACAGCCTGTCAGTATAAGTTAGCAGTGGAACGTTATGAATGGAACAAG
TTGCAAAATGTAAAGTCAATAGTACCCATGGTTCATCTTTCCTGGAATATGGCACGAAATATCAAGGTTT
CAGATCCAAAGCTTTTTGAAATGATTAAGTATTGTCTTCTGAGAACGCTGAAGCAATGTCAGACATTGAG
GGAAGCTCTAATTGCTGCAGGAAAAGAGATCATATGGCACGGGCGGACAAAAGAAGAACCAGCTCATTAT
TGTAGTATTTGTGAGGTGGAGGTTTTTGATCTGCTTTTTGTCACTAATGAGAGTAATTCTCGAAAAACCT
ACATAGTACATTGCCAAGATTGTGCACGAAAAACAAGTGGGAATCTGGAAAATTTTGTGGTGCTAGAACA
GTACAAAATGGAGGATCTGATGCAAGTCTATGACCAATTTACATTAGCTCCTCCATTACCATCCGCCTCA
TCTTGA

Translation (1401 aa):
MKSCGVSLATAAAAAAAAAFGDEEKKMAAGKASGESEEASPSLTAEEREALGGLDSRLFGFVRFHEDGAR
MKALLGKAVRCYESLILKAEGKVESDFFCQLGHFNLLLEDYPKALSAYQRYYSLQSDYWKNAAFLYGLGL
VYFHYNAFQWAIKAFQEVLYVDPSFCRAKEIHLRLGLMFKVNTDYESSLKHFQLALVDCNPCTLSNAEIQ
FHIAHLYETQRKYHSAKEAYEQLLQTENLSAQVKATILQQLGWMHHTVDLLGDKATKESYAIQYLQKSLE
ADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYICAVQLD
HGHAAAWMDLGTLYESCNQPQDAIKCYLNATRSKNCSNTSGLAARIKYLQAQLCNLPQGSLQNKTKLLPS
IEEAWSLPIPAELTSRQGAMNTAQQNTSDNWSGGNAPPPVEQQTHSWCLTPQKLQHLEQLRANRNNLNPA
QKLMLEQLESQFVLMQQHQMRQTGVAQVRPTGILNGPTVDSSLPTNSVSGQQPQLPLTRMPSVSQPGVHT
ACPRQTLANGPFSAGHVPCSTSRTLGSTDTVLIGNNHVTGSGSNGNVPYLQRNAPTLPHNRTNLTSSTEE
PWKNQLSNSTQGLHKGPSSHLAGPNGERPLSSTGPSQHLQAAGSGIQNQNGHPTLPSNSVTQGAALNHLS
SHTATSGGQQGITLTKESKPSGNTLTVPETSRQTGETPNSTASVEGLPNHVHQVMADAVCSPSHGDSKSP
GLLSSDNPQLSALLMGKANNNVGPGTCDKVNNIHPTVHTKTDNSVASSPSSAISTATPSPKSTEQTTTNS
VTSLNSPHSGLHTINGEGMEESQSPIKTDLLLVSHRPSPQIIPSMSVSIYPSSAEVLKACRNLGKNGLSN
SSILLDKCPPPRPPSSPYPPLPKDKLNPPTPSIYLENKRDAFFPPLHQFCTNPNNPVTVIRGLAGALKLD
LGLFSTKTLVEANNEHMVEVRTQLLQPADENWDPTGTKKIWHCESNRSHTTIAKYAQYQASSFQESLREE
NEKRSHHKDHSDSESTSSDNSGKRRKGPFKTIKFGTNIDLSDDKKWKLQLHELTKLPAFVRVVSAGNLLS
HVGHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVNINIGPGDCEWFVVPEGYWGVLNDFCEKNNLNFLM
GSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLTACQYKLAVERYEWNK
LQNVKSIVPMVHLSWNMARNIKVSDPKLFEMIKYCLLRTLKQCQTLREALIAAGKEIIWHGRTKEEPAHY
CSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGNLENFVVLEQYKMEDLMQVYDQFTLAPPLPSAS
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH