NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS81103.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81103.1 Public Mus musculus X Cdk16 23 108 98 CCDS HistoryNCBI Gene:18555Re-query CCDS DB by CCDS ID:81103.1Re-query CCDS DB by GeneID:18555See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81103.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115364.7 ENSMUSP00000111021.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115364.7Link to Ensembl Protein Viewer:ENSMUSP00000111021.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115364Re-query CCDS DB by Protein ID:ENSMUSP00000111021
Original member NCBI NM_001310456.1 NP_001297385.1 Updated not alive Link to Nucleotide Sequence:NM_001310456.1Link to Protein Sequence:NP_001297385.1Re-query CCDS DB by Nucleotide ID:NM_001310456Re-query CCDS DB by Protein ID:NP_001297385
Current member NCBI NM_001310456.2 NP_001297385.1 Accepted alive Link to Nucleotide Sequence:NM_001310456.2Link to Protein Sequence:NP_001297385.1Re-query CCDS DB by Nucleotide ID:NM_001310456Re-query CCDS DB by Protein ID:NP_001297385Link to BLAST:NP_001297385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297385.1 461 Q04735-2 461 100% 0 0

Chromosomal Locations for CCDS 81103.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 20693941 20694171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20694271 20694396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20694489 20694545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20694632 20694746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20695510 20695604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20695699 20695761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696018 20696141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696347 20696467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696548 20696645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696731 20696836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20696922 20696964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20697120 20697210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20698451 20698528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 20698609 20698646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGTACACAAATGGATACGATGAAGAAATATATTATATTGGGGGAAAGAGAGTGTTCTTGACTCCAAAGG
CCTGGCCTTTCCCTCTCCCCACCCCAGAGATTGTGCACGAGGACATGAAGATGGGATCTGATGGGGAGAG
TGACCAGGCTTCAGCCACATCCTCAGATGAGGTGCAGTCTCCAGTGAGAGTGCGCATGCGCAACCACCCC
CCACGCAAGATCTCCACTGAGGACATCAACAAACGCCTGTCACTACCAGCTGACATACGGCTGCCTGAGG
GCTACCTTGAGAAGCTGACCCTCAATAGCCCCATCTTTGATAAGCCTCTTAGCCGGCGCCTCCGCCGAGT
CAGTTTGTCTGAGATTGGCTTTGGAAAACTGGAGACCTACATCAAGCTAGACAAGCTGGGTGAGGGTACC
TATGCCACTGTCTACAAAGGCAAAAGCAAGCTCACAGACAACCTTGTAGCACTTAAGGAGATCAGACTGG
AACACGAAGAAGGGGCACCCTGTACTGCTATCCGGGAAGTATCCCTGCTTAAGGACCTCAAGCATGCCAA
CATCGTCACACTACATGACATTATCCACACAGAGAAGTCCCTCACACTTGTCTTTGAATACTTGGACAAG
GACCTGAAGCAGTACCTGGATGACTGTGGAAATGTCATCAACATGCACAATGTGAAACTGTTCCTGTTCC
AGTTGCTCCGTGGCCTGGCCTACTGCCACAGGCAGAAGGTGCTACACCGAGACCTCAAGCCCCAGAACCT
ACTCATCAACGAGAGGGGAGAGCTCAAACTGGCAGATTTTGGCCTGGCTCGTGCCAAGTCAATTCCTACT
AAAACATACTCCAACGAAGTGGTGACACTGTGGTACCGGCCCCCTGACATCCTACTTGGGTCCACAGACT
ACTCTACCCAAATTGACATGTGGGGTGTAGGCTGCATCTTCTATGAGATGGCCACCGGCCGGCCCCTCTT
CCCAGGCTCCACAGTGGAAGAACAGCTGCACTTCATCTTCCGCATTTTGGGAACCCCAACTGAGGAGACA
TGGCCAGGTATCCTGTCCAATGAGGAGTTTAGAACATACAACTACCCCAAGTACCGAGCCGAGGCCCTTC
TGAGCCATGCACCCCGACTTGATAGCGATGGAGCTGACCTCCTCACCAAGCTGCTGCAGTTTGAGGGTCG
CAATCGGATCTCTGCTGAGGATGCCAGGAAACATCCATTCTTTCTCAGCTTGGGGGAGCGGATCCACAAA
CTTCCTGACACTACTTCCATATTTGCACTAAAGGAGGTACAGCTACAAAAGGAGGCCAACATTCGGTCCA
CTTCTATGCCTGACTCAGGCAGGCCAGCTTTCCGTGTGGTGGATACCGAGTTCTAA

Translation (461 aa):
MYTNGYDEEIYYIGGKRVFLTPKAWPFPLPTPEIVHEDMKMGSDGESDQASATSSDEVQSPVRVRMRNHP
PRKISTEDINKRLSLPADIRLPEGYLEKLTLNSPIFDKPLSRRLRRVSLSEIGFGKLETYIKLDKLGEGT
YATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEYLDK
DLKQYLDDCGNVINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPT
KTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEET
WPGILSNEEFRTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDARKHPFFLSLGERIHK
LPDTTSIFALKEVQLQKEANIRSTSMPDSGRPAFRVVDTEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH