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Report for CCDS81471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81471.1 Public Homo sapiens 10 TBATA 24 110 108 CCDS HistoryNCBI Gene:219793Re-query CCDS DB by CCDS ID:81471.1Re-query CCDS DB by GeneID:219793See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81471.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000456372.4 ENSP00000400224.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000456372.4Link to Ensembl Protein Viewer:ENSP00000400224.3Re-query CCDS DB by Nucleotide ID:ENST00000456372Re-query CCDS DB by Protein ID:ENSP00000400224
Original member Current member NCBI NM_001318241.2 NP_001305170.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001318241.2Link to Protein Sequence:NP_001305170.1Re-query CCDS DB by Nucleotide ID:NM_001318241Re-query CCDS DB by Protein ID:NP_001305170Link to BLAST:NP_001305170.1

Chromosomal Locations for CCDS 81471.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 70771376 70771461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70772514 70772566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70774213 70774357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70775189 70775270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70777153 70777338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70778557 70778636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70779593 70779742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70781801 70782036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 70783339 70783379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1059 nt):
ATGGCTACAGATGTTCAATTGGCTGATTATCCACTGATGAGTCCAAAGGCTGAGCTGAAACTGGAGAAGA
AGTCAGGGCGCAAGCCAAGGAGCCCCAGGGACAGTGGGCCACAGAAAGAACTGGTGATCCCAGGGATTGT
GGATTTCGAGCGGATCCGCCGGGCATTGAGGACCCCAAAGCCCCAAACCCCTGGCACCTACTGCTTTGGA
CGCCTCAGTCACCACTCCTTCTTCTCCCGGCACCACCCACACCCCCAGCACGTGACCCACATCCAAGATC
TCACCGGGAAGCCTGTCTGTGTCGTCAGGGATTTTCCAGCCCCCTTGCCTGAGTCAACTGTCTTTTCCGG
CTGTCAAATGGGGATACCCACCATCTCTGTCCCCATTGGAGACCCACAGTCTAATCGGAACCCCCAGCTT
TCTTCTGAAGCCTGGAAGAAGGAGTTGAAGGAGCTAGCTTCCCGGGTGGCCTTCCTCACCAAGGAGGATG
AACTGAAGAAGAAAGAGCAGAAGGAGCAGAAGGAGGAGCCTCTGCGGGAGCAGGGGGCAAAGTACTCAGC
AGAGACTGGGAGGCTCATCCCCGCTTCCACCCGGGCTGTCGGCCGCCGCAGATCTCACCAGGGCCAGCAG
AGTCAGTCTTCCAGCAGACATGAAGGAGTCCAGGCTTTCCTCCTTCAGGATCAGGAGCTGCTGGTCCTGG
AGCTCCTGTGTCGGATCCTGGAAACAGACTTGCTAAGCGCAATCCAGTTCTGGCTGCTCTACGCTCCGCC
CAAGGAAAAAGACCTCGCTCTGGGACTCCTGCAGACAGCAGTGGCTCAGCTCCTTCCCCAGCCCCTAGTC
TCCATCCCTACAGAAAAGCTCCTAAGCCAGCTTCCAGAAGTGCATGAACCTCCTCAAGAGAAGCAAGAGC
CACCCTGCAGTCAATCCCCGAAGAAAACGAAGATATCACCTTTTACAAAAAGCGAAAAACCAGAGTACAT
TGGAGAAGCTCAAGTCCTCCAGATGCATTCAAGCCAGAACACAGAGAAGAAGACATCGAAGCCGAGGGCA
GAGAGCTGA

Translation (352 aa):
MATDVQLADYPLMSPKAELKLEKKSGRKPRSPRDSGPQKELVIPGIVDFERIRRALRTPKPQTPGTYCFG
RLSHHSFFSRHHPHPQHVTHIQDLTGKPVCVVRDFPAPLPESTVFSGCQMGIPTISVPIGDPQSNRNPQL
SSEAWKKELKELASRVAFLTKEDELKKKEQKEQKEEPLREQGAKYSAETGRLIPASTRAVGRRRSHQGQQ
SQSSSRHEGVQAFLLQDQELLVLELLCRILETDLLSAIQFWLLYAPPKEKDLALGLLQTAVAQLLPQPLV
SIPTEKLLSQLPEVHEPPQEKQEPPCSQSPKKTKISPFTKSEKPEYIGEAQVLQMHSSQNTEKKTSKPRA
ES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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