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Report for CCDS81564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81564.1 Public Homo sapiens 11 SLC39A13 24 110 108 CCDS HistoryNCBI Gene:91252Re-query CCDS DB by CCDS ID:81564.1Re-query CCDS DB by GeneID:91252See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81564.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000533076.5 ENSP00000434290.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000533076.5Link to Ensembl Protein Viewer:ENSP00000434290.1Re-query CCDS DB by Nucleotide ID:ENST00000533076Re-query CCDS DB by Protein ID:ENSP00000434290
Original member Current member NCBI NM_001330245.2 NP_001317174.2 Accepted alive Link to Nucleotide Sequence:NM_001330245.2Link to Protein Sequence:NP_001317174.2Re-query CCDS DB by Nucleotide ID:NM_001330245Re-query CCDS DB by Protein ID:NP_001317174Link to BLAST:NP_001317174.2

Chromosomal Locations for CCDS 81564.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 47410095 47410395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47411926 47412039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47412346 47412467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47413400 47413507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47413597 47413686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47414425 47414475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47414777 47414905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 47415060 47415122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGCCTGGATGTCCCTGCCCTGGCTGTGGCATGGCGGGCCCAAGGCTCCTCTTCCTCACTGCCCTTGCCC
TGGAGCTCTTGGAAAGGGCTGGGGGTTCCCAGCCGGCCCTCCGGAGCCGGGGGACTGCGACGGCCTGTCG
CCTGGACAACAAGGAAAGCGAGTCCTGGGGGGCTCTGCTGAGCGGAGAGCGGCTGGACACCTGGATCTGC
TCCCTCCTGGGTTCCCTCATGGTGGGGCTCAGTGGGGTCTTCCCGTTGCTTGTCATTCCCCTAGAGATGG
GGACCATGCTGCGCTCAGAAGCTGGGGCCTGGCGCCTGAAGCAGCTGCTCAGCTTCGCCCTGGGGGGACT
CTTGGGCAATGTGTTTCTGCATCTGCTGCCCGAAGCCTGGGCCTACACGTGCAGCGCCAGCCCTGGTGGT
GAGGGGCAGAGCCTGCAGCAGCAGCAACAGCTGGGGCTGTGGGTCATTGCTGGCATCCTGACCTTCCTGG
CGTTGGAGAAGATGTTCCTGGACAGCAAGGAGGAGGGGACCAGCCAGGCCCCCAACAAAGACCCCACTGC
TGCTGCCGCCGCGCTCAATGGAGGCCACTGTCTGGCCCAGCCGGCTGCAGAGCCCGGCCTCGGTGCCGTG
GTCCGGAGCATCAAAGTCAGCGGCTACCTCAACCTGCTGGCCAACACCATCGATAACTTCACCCACGGGC
TGGCTGTGGCTGCCAGCTTCCTTGTGAGCAAGAAGATCGGGCTCCTGACAACCATGGCCATCCTCCTGCA
TGAGATCCCCCATGAGGTGGGCGACTTTGCCATCCTGCTCCGGGCCGGCTTTGACCGATGGAGCGCAGCC
AAGCTGCAACTCTCAACAGCGCTGGGGGGCCTACTGGGCGCTGGCTTCGCCATCTGTACCCAGTCCCCCA
AGGGAAGGAGACGGCAGCCTGGGTCCTGCCCTTCACCTCTGGCGGCTTTCTCTACATCGCCTTGGTGA

Translation (325 aa):
MPGCPCPGCGMAGPRLLFLTALALELLERAGGSQPALRSRGTATACRLDNKESESWGALLSGERLDTWIC
SLLGSLMVGLSGVFPLLVIPLEMGTMLRSEAGAWRLKQLLSFALGGLLGNVFLHLLPEAWAYTCSASPGG
EGQSLQQQQQLGLWVIAGILTFLALEKMFLDSKEEGTSQAPNKDPTAAAAALNGGHCLAQPAAEPGLGAV
VRSIKVSGYLNLLANTIDNFTHGLAVAASFLVSKKIGLLTTMAILLHEIPHEVGDFAILLRAGFDRWSAA
KLQLSTALGGLLGAGFAICTQSPKGRRRQPGSCPSPLAAFSTSPW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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