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Report for CCDS81622.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81622.1 Public Homo sapiens 11 C11orf65 24 110 108 CCDS HistoryNCBI Gene:160140Re-query CCDS DB by CCDS ID:81622.1Re-query CCDS DB by GeneID:160140See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81622.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000525729.5 ENSP00000433395.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525729.5Link to Ensembl Protein Viewer:ENSP00000433395.1Re-query CCDS DB by Nucleotide ID:ENST00000525729Re-query CCDS DB by Protein ID:ENSP00000433395
Original member Current member NCBI NM_001330368.2 NP_001317297.1 Accepted alive Link to Nucleotide Sequence:NM_001330368.2Link to Protein Sequence:NP_001317297.1Re-query CCDS DB by Nucleotide ID:NM_001330368Re-query CCDS DB by Protein ID:NP_001317297Link to BLAST:NP_001317297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317297.1 246 Q8NCR3-2 246 100% 0 0

Chromosomal Locations for CCDS 81622.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 108308971 108309071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108385920 108385975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108393208 108393378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108405429 108405559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108406763 108406963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108461479 108461559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (741 nt):
ATGCCTTGGAAAGAGGAATCAGAATTTACAAAGCAGGATAAGGCTGCCAGAGTCATTCAGCAGGCCTGGA
AAAGTTTCCTTGTTAAATTTCCACCTGATATATACTATAAGATTTTTACTCACAGACCTATTGAAGATCT
CTGTGCTAACAGCCCTAGAAATTATGCAAAACTTCCAGCAAAGCATACATCTCATAATAAAAATGATCAT
CTTCAGGAAGAGGATCATAGTGGCTGGTATCATCGTATAGAAAACAATGGCTGGAGGCCAGTTTCTGATA
CATTTTGGCTATCTACTGATGGTATGGTGGTGGAAGACAAAAAGGAAAGTGAATTCCATTTCTCTAAACT
GAAGAGAAGGCAAGATTTGGAAAAGAAAAGAAAACTTAGAAAAATAGAGTGGATGAGGCAAATGTACTAC
TCAGGAAGTCTGGAGGCTAAGTCAACACATCATGAAACTCTAGGACTAATTCACACTGCAACAAAGGGGC
TGATTAGAGCTTTTGAAGATGGGGGGATAGATTCTGTGATGGAATGGGAAGTGGATGAAGTGCTGAACTG
GACAAATACACTGAACTTTGATGAGTACATTGCCAGCTGGAAGGAAATTGCTACAAGCAACTCTTCGGCT
AACTTCAAAGGAATATTCTTCAGGATCTTATTCAGCATTAAAATGGAATATGAAGAATTTTTATCTTCTC
CAACTCCTGCTAATGTCAACACCATTCTACCCCAATGGTAA

Translation (246 aa):
MPWKEESEFTKQDKAARVIQQAWKSFLVKFPPDIYYKIFTHRPIEDLCANSPRNYAKLPAKHTSHNKNDH
LQEEDHSGWYHRIENNGWRPVSDTFWLSTDGMVVEDKKESEFHFSKLKRRQDLEKKRKLRKIEWMRQMYY
SGSLEAKSTHHETLGLIHTATKGLIRAFEDGGIDSVMEWEVDEVLNWTNTLNFDEYIASWKEIATSNSSA
NFKGIFFRILFSIKMEYEEFLSSPTPANVNTILPQW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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