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Report for CCDS81744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81744.1 Public Homo sapiens 12 SLC8B1 24 110 108 CCDS HistoryNCBI Gene:80024Re-query CCDS DB by CCDS ID:81744.1Re-query CCDS DB by GeneID:80024See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81744.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000546737.5 ENSP00000450081.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000546737.5Link to Ensembl Protein Viewer:ENSP00000450081.1Re-query CCDS DB by Nucleotide ID:ENST00000546737Re-query CCDS DB by Protein ID:ENSP00000450081
Original member Current member NCBI NM_001330466.2 NP_001317395.1 Accepted alive Link to Nucleotide Sequence:NM_001330466.2Link to Protein Sequence:NP_001317395.1Re-query CCDS DB by Nucleotide ID:NM_001330466Re-query CCDS DB by Protein ID:NP_001317395Link to BLAST:NP_001317395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317395.1 528 Q6J4K2-2 528 100% 0 0

Chromosomal Locations for CCDS 81744.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 113299777 113299974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113304321 113304385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113306495 113306575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113307691 113307844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113310234 113310355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113315335 113315476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113316526 113316656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113316942 113317001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113318964 113319071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113320581 113320686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113320850 113320907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113321056 113321108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113321196 113321348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 113332723 113332878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCCGGCAGAAGGCTGAATCTGCGCTGGGCACTGAGTGTGCTTTGTGTGCTGCTAATGGCGGAGACAG
TGTCTGGGACTAGGGGCTCGTCTACAGGAGCTCACATTAGCCCCCAGTTTCCAGCTTCAGGTGTGAACCA
GACCCCCGTGGTAGACTGCCGCAAGGTGTGTGGCCTGAATGTCTCTGACCGCTGTGACTTCATCCGGACC
AACCCTGACTGCCACAGTGATGGGGGGTACCTGGACTACCTGGAAGGCATCTTCTGCCACTTCCCTCCCA
GCCTCCTCCCTCTGGCTGTCACTCTCTACGTTTCCTGGCTGCTCTACCTGTTTCTGATTCTGGGAGTCAC
CGCAGCCAAGTTTTTCTGCCCCAACTTGTCGGCCATTTCTACCACACTGAAGCTCTCCCACAACGTGGCA
GGCGTCACCTTCCTGGCATTTGGGAATGGTGCACCTGACATCTTCAGTGCCCTGGTGGCCTTCTCTGACC
CGCACACAGCCGGCCTGGCCCTTGGGGCACTGTTTGGTTACCTGGGCTTGTATGTGTTCTATGTGGTCAC
TGTGATTCTCTGCACCTGGATCTACCAACGGCAACGGAGAGGATCTCTGTTCTGCCCCATGCCAGTTACT
CCAGAGATCCTCTCAGACTCCGAGGAGGACCGGGTATCTTCTAATACCAACAGCTATGACTACGGTGATG
AGTACCGGCCGCTGTTCTTCTACCAGGAGACCACGGCTCAGATCCTGGTCCGGGCCCTCAATCCCCTGGA
TTACATGAAGTGGAGAAGGAAATCAGCATACTGGAAAGCCCTCAAGGTGTTCAAGCTGCCTGTGGAGTTC
CTGCTGCTCCTCACAGTCCCCGTCGTGGACCCGGACAAGGATGACCAGAACTGGAAACGGCCCCTCAACT
GTCTGCATCTGGTTATCAGCCCCCTGGTTGTGGTCCTGACCCTGCAGTCGGGGACCTATGGTGTCTATGA
GATAGGCGGCCTCGTTCCCGTCTGGGTCGTGGTGGTGATCGCAGGCACAGCCTTGGCTTCAGTGACCTTT
TTTGCCACATCTGACAGCCAGCCCCCCAGGCTTCACTGGCTCTTTGCTTTCCTGGGCTTTCTGACCAGCG
CCCTGTGGATCAACGCGGCCGCCACAGAGGTGGTGAACATCTTGCGGTCCCTGGGTGTGGTCTTCCGGCT
GAGCAACACTGTGCTGGGGCTCACGCTGCTGGCCTGGGGGAACAGCATTGGAGATGCCTTCTCGGATTTC
ACACTGGCTCGCCAGGGCTACCCACGGATGGCGTTCTCCGCCTGCTTTGGCGGCATCATCTTCAACATCC
TCGTGGGTGTGGGGCTGGGCTGCCTGCTCCAGATCTCCCGAAGCCACACAGAAGTGAAGCTGGAGCCAGA
CGGACTGCTGGTGTGGGTCCTGGCAGGCGCCCTGGGGCTCAGCCTCGTCTTCTCCCTGGTCTCAGTCCCA
TTGCAGTGCTTCCAGCTCAGCAGAGTCTATGGCTTCTGCCTGCTCCTCTTCTACCTGAACTTCCTTGTCG
TGGCCCTCCTCACTGAATTTGGAGTGATTCACCTGAAAAGCATGTGA

Translation (528 aa):
MAGRRLNLRWALSVLCVLLMAETVSGTRGSSTGAHISPQFPASGVNQTPVVDCRKVCGLNVSDRCDFIRT
NPDCHSDGGYLDYLEGIFCHFPPSLLPLAVTLYVSWLLYLFLILGVTAAKFFCPNLSAISTTLKLSHNVA
GVTFLAFGNGAPDIFSALVAFSDPHTAGLALGALFGYLGLYVFYVVTVILCTWIYQRQRRGSLFCPMPVT
PEILSDSEEDRVSSNTNSYDYGDEYRPLFFYQETTAQILVRALNPLDYMKWRRKSAYWKALKVFKLPVEF
LLLLTVPVVDPDKDDQNWKRPLNCLHLVISPLVVVLTLQSGTYGVYEIGGLVPVWVVVVIAGTALASVTF
FATSDSQPPRLHWLFAFLGFLTSALWINAAATEVVNILRSLGVVFRLSNTVLGLTLLAWGNSIGDAFSDF
TLARQGYPRMAFSACFGGIIFNILVGVGLGCLLQISRSHTEVKLEPDGLLVWVLAGALGLSLVFSLVSVP
LQCFQLSRVYGFCLLLFYLNFLVVALLTEFGVIHLKSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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