NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82564.1 Public Homo sapiens 2 CCNYL1 24 110 108 CCDS HistoryNCBI Gene:151195Re-query CCDS DB by CCDS ID:82564.1Re-query CCDS DB by GeneID:151195See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82564.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000295414.8 ENSP00000295414.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000295414.8Link to Ensembl Protein Viewer:ENSP00000295414.3Re-query CCDS DB by Nucleotide ID:ENST00000295414Re-query CCDS DB by Protein ID:ENSP00000295414
Original member Current member NCBI NM_001330218.2 NP_001317147.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001330218.2Link to Protein Sequence:NP_001317147.1Re-query CCDS DB by Nucleotide ID:NM_001330218Re-query CCDS DB by Protein ID:NP_001317147Link to BLAST:NP_001317147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001317147.1 359 Q8N7R7-1 359 100% 0 0

Chromosomal Locations for CCDS 82564.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 207711897 207712116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 207724800 207724874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 207726842 207726876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 207733947 207734047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 207737411 207737446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 207740655 207740706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 207742223 207742342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 207747047 207747213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 207750957 207751119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 207753588 207753698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGGGGAACACGCTGACCTGTTGCGTGTCCCCCAATGCCAGCCCCAAGCTGGGCCGGCGCGCGGGGTCGG
CGGAGCTGTACTGCGCGTCCGACATCTACGAGGCGGTGTCCGGGGACGCGGTGGCGGTAGCGCCCGCTGT
GGTGGAGCCTGCCGAGTTGGATTTCGGAGAGGGCGAGGGCCACCACCTGCAGCACATCAGCGACCGCGAG
ATGCCCGAAGATTTAGCTTTGGAGTCAAACCCTTCTGACCATCCAAGGGCAAGCACAATTTTCCTGAGCA
AATCTCAAACGGATGTGCGAGAAAAGAGGAAGAGCAACCATTTGAACCATGTATCTCCAGGGCAGCTTAC
TAAAAAGTATAGCTCATGCTCAACAATATTTCTAGATGACAGCACAGTCAGCCAGCCTAATCTTAGAACC
ACAGTAAAATGTGTGACCTTAGCAATATATTACCACATAAAGAACAGAGATGCAAATAGATCCCTGGATA
TTTTTGATGAGAGATCACATCCACTTACACGAGAAAAAGTTCCAGAGGAATACTTTAAGCATGATCCTGA
GCACAAATTTATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAATA
GTAACTTTGGTTTACTTAGAAAGGCTTTTAACTTATGCTGAAATCGACATTTGTCCCACCAACTGGAAAA
GGATTGTTCTGGGAGCCATTCTTCTTGCCTCCAAGGTTTGGGACGATCAGGCTGTATGGAATGTGGACTA
CTGCCAGATCCTCAAGGACATTACAGTTGAGGACATGAATGAAATGGAAAGGCATTTTCTGGAGCTTCTT
CAGTTTAATATTAATGTTCCTGCCAGTGTTTATGCCAAATACTACTTTGACCTTCGCTCCTTAGCAGATG
ACAACAACCTGAATTTTCTATTTGCTCCTCTTAGCAAAGAAAGAGCACAGAACCTAGAGGCTATTTCTAG
ATTGTGTGAAGACAAAGACTTGTGTAGAGCCGCTATGAGAAGGTCTTTCAGTGCTGATAACTTCATTGGT
ATTCAGCGCTCTAAAGCCATCCTCTCTTAA

Translation (359 aa):
MGNTLTCCVSPNASPKLGRRAGSAELYCASDIYEAVSGDAVAVAPAVVEPAELDFGEGEGHHLQHISDRE
MPEDLALESNPSDHPRASTIFLSKSQTDVREKRKSNHLNHVSPGQLTKKYSSCSTIFLDDSTVSQPNLRT
TVKCVTLAIYYHIKNRDANRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAI
VTLVYLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELL
QFNINVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKDLCRAAMRRSFSADNFIG
IQRSKAILS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH