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Report for CCDS82748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82748.1 Public Homo sapiens 3 SLC4A7 24 110 108 CCDS HistoryNCBI Gene:9497Re-query CCDS DB by CCDS ID:82748.1Re-query CCDS DB by GeneID:9497See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82748.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000445684.5 ENSP00000406804.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445684.5Link to Ensembl Protein Viewer:ENSP00000406804.1Re-query CCDS DB by Nucleotide ID:ENST00000445684Re-query CCDS DB by Protein ID:ENSP00000406804
Original member Current member NCBI NM_001321105.2 NP_001308034.1 Accepted alive Link to Nucleotide Sequence:NM_001321105.2Link to Protein Sequence:NP_001308034.1Re-query CCDS DB by Nucleotide ID:NM_001321105Re-query CCDS DB by Protein ID:NP_001308034Link to BLAST:NP_001308034.1

Chromosomal Locations for CCDS 82748.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 27376764 27376845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27383153 27383250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27385892 27386023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27389931 27390104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27391740 27391808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27394518 27394769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27394954 27395115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27397684 27397797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27398192 27398353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27400764 27400869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27403139 27403384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27404830 27404963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27409356 27409530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27411642 27411748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27418486 27418632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27420700 27420787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27421622 27421779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27424037 27424152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27431298 27431669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27433955 27434104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27436388 27436548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27437388 27437526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27448651 27448797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27452417 27452498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 27484067 27484126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3633 nt):
ATGGAGGCTGATGGGGCCGGCGAGCAGATGAGACCGCTACTCACCCGGGTAACGAGCAGGGGTCCTGATG
AAGAAGCTGTTGTGGATCTTGGCAAAACTAGCTCAACTGTGAACACCAAGTTTGAAAAAGAAGAACTAGA
AAGTCATAGAGCTGTATATATTGGTGTTCACGTCCCGTTTAGTAAAGAGAGTCGTCGGCGTCATAGGCAT
CGCGGACACAAACATCACCACCGGAGAAGAAAAGATAAAGAATCAGATAAAGAAGATGGACGGGAATCTC
CTTCTTATGATACACCATCCCAGAGAGTTCAGTTTATCCTTGGTACTGAAGATGATGATGAAGAACATAT
TCCCCATGATCTCTTCACGGAAATGGATGAACTGTGTTACAGAGATGGAGAAGAATATGAATGGAAAGAA
ACTGCTAGATGGCTGAAATTTGAAGAGGATGTTGAAGATGGCGGTGACCGATGGAGTAAACCTTATGTGG
CAACTCTCTCTTTGCACAGTCTTTTTGAACTAAGGAGTTGCATCCTCAATGGAACAGTCATGCTGGATAT
GAGAGCAAGCACTCTAGATGAAATAGCAGATATGGTATTAGACAACATGATAGCTTCTGGCCAATTAGAC
GAGTCCATACGAGAGAATGTCAGAGAAGCTCTTCTGAAGAGACATCATCATCAGAATGAGAAAAGATTCA
CCAGTCGGATTCCTCTTGTTCGATCTTTTGCAGATATAGGGGAAGGCCTTTCAGCCTCCCGCCACTCTTT
GCGAACAGGTCTGTCTGCCTCAAACCTTTCCTTGAGAGGAGAATCACCTTTATCTCTTCTTCTTGGTCAT
CTTCTTCCTTCTTCAAGAGCTGGAACCCCTGCAGGCTCAAGGTGTACAACCCCAGTACCCACCCCTCAAA
ACAGTCCTCCTTCTAGCCCTAGCATCAGCCGCCTGACCTCCAGAAGTTCCCAAGAGAGTCAGCGTCAGGC
CCCAGAACTACTGGTTTCACCTGCCAGTGATGATATTCCCACAGTAGTAATTCATCCGCCTGAGGAAGAC
TTAGAAGCAGCGCTGAAAGGCGAGGAGCAGAAGAATGAGGAAAATGTTGACTTAACTCCAGGTATTTTGG
CCTCTCCCCAGTCTGCTCCTGGAAACTTGGACAATAGTAAAAGTGGAGAAATTAAAGGTAATGGAAGTGG
TGGAAGCAGAGAAAATAGTACTGTTGACTTCAGCAAGGTTGATATGAATTTCATGAGAAAAATTCCTACG
GGTGCTGAGGCATCCAACGTCCTGGTGGGCGAAGTAGACTTTTTGGAAAGGCCAATAATTGCATTTGTGA
GACTGGCTCCTGCTGTCCTCCTTACAGGGTTGACTGAGGTCCCTGTTCCAACCAGGTTTTTGTTTTTGTT
ATTGGGTCCAGCGGGCAAGGCACCACAGTACCATGAAATTGGACGATCAATAGCCACTCTCATGACAGAT
GAGATTTTCCATGATGTAGCTTATAAAGCAAAAGACAGAAATGACCTCTTATCTGGAATTGATGAATTTT
TAGATCAAGTAACTGTCCTACCTCCAGGAGAGTGGGATCCTTCTATACGCATAGAACCACCAAAAAGTGT
CCCTTCTCAGGAAAAGAGAAAGATTCCTGTGTTTCACAATGGATCTACCCCCACACTGGGTGAGACTCCT
AAAGAGGCCGCTCATCATGCTGGGCCTGAGCTACAGAGGACTGGACGGCTTTTTGGTGGTTTGATACTTG
ACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTC
GATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAGCTACA
GAAGGCAGAATAAGTGCAATAGAGTCTCTTTTTGGAGCATCATTAACTGGGATTGCCTATTCATTGTTTG
CTGGGCAACCTCTAACAATATTGGGGAGCACAGGTCCAGTTCTAGTGTTTGAAAAAATTTTATATAAATT
CTGCAGAGATTATCAACTTTCTTATCTGTCTTTAAGAACCAGTATTGGTCTGTGGACTTCTTTTTTGTGC
ATTGTTTTGGTTGCAACAGATGCAAGCAGCCTTGTGTGTTATATTACTCGATTTACAGAAGAGGCTTTTG
CAGCCCTTATTTGCATCATATTCATCTACGAGGCTTTGGAGAAGCTCTTTGATTTAGGAGAAACATATGC
ATTTAATATGCACAACAACTTAGATAAACTGACCAGCTACTCATGTGTATGTACTGAACCTCCAAACCCC
AGCAATGAAACTCTAGCACAATGGAAGAAAGATAATATAACAGCACACAATATTTCCTGGAGAAATCTTA
CTGTTTCTGAATGTAAAAAACTTCGTGGTGTATTCTTGGGGTCAGCTTGTGGTCATCATGGACCTTATAT
TCCAGATGTGCTCTTTTGGTGTGTCATCTTGTTTTTCACAACATTTTTTCTGTCTTCATTCCTCAAGCAA
TTTAAGACCAAGCGTTACTTTCCTACCAAGGTGCGATCGACAATCAGTGATTTTGCTGTATTTCTCACAA
TAGTAATAATGGTTACAATTGACTACCTTGTAGGAGTTCCATCTCCTAAACTTCATGTTCCTGAAAAATT
TGAGCCTACTCATCCAGAGAGAGGGTGGATCATAAGCCCACTGGGAGATAATCCTTGGTGGACCTTATTA
ATAGCTGCTATTCCTGCTTTGCTTTGTACCATTCTCATCTTTATGGATCAACAAATCACAGCTGTAATTA
TAAACAGAAAGGAACACAAATTGAAGAAAGGAGCTGGCTATCACCTTGATTTGCTCATGGTTGGCGTTAT
GTTGGGAGTTTGCTCTGTCATGGGACTTCCATGGTTTGTGGCTGCAACAGTGTTGTCAATAAGTCATGTC
AACAGCTTAAAAGTTGAATCTGAATGTTCTGCTCCAGGGGAACAACCCAAGTTTTTGGGAATTCGTGAAC
AGCGGGTTACAGGGCTAATGATTTTTATTCTAATGGGCCTCTCTGTGTTCATGACTTCAGTCCTAAAGTT
TATTCCAATGCCTGTTCTGTATGGTGTTTTCCTTTATATGGGAGTTTCCTCATTAAAAGGAATCCAGTTA
TTTGACCGTATAAAATTATTTGGAATGCCTGCTAAGCATCAGCCTGATTTGATATACCTCCGTTATGTGC
CGCTCTGGAAGGTCCATATTTTCACAGTCATTCAGCTTACTTGTTTGGTCCTTTTATGGGTGATAAAAGT
TTCAGCTGCTGCAGTGGTTTTTCCCATGATGGTTCTTGCATTAGTGTTTGTGCGCAAACTCATGGACCTG
TGTTTCACGAAGAGAGAACTTAGTTGGCTTGATGATCTTATGCCAGAAAGTAAGAAAAAGAAAGAAGATG
ACAAAAAGAAAAAAGAGAAAGAGGAAGCTGAACGGATGCTTCAAGATGATGATGATACTGTGCACCTTCC
ATTTGAAGGGGGAAGTCTCTTGCAAATTCCAGTCAAGGCCCTAAAATATAGTCCTGATAAACCTGTGAGT
GTGAAAATAAGTTTTGAAGATGAACCAAGAAAGAAATACGTGGATGCTGAAACTTCATTATAG

Translation (1210 aa):
MEADGAGEQMRPLLTRVTSRGPDEEAVVDLGKTSSTVNTKFEKEELESHRAVYIGVHVPFSKESRRRHRH
RGHKHHHRRRKDKESDKEDGRESPSYDTPSQRVQFILGTEDDDEEHIPHDLFTEMDELCYRDGEEYEWKE
TARWLKFEEDVEDGGDRWSKPYVATLSLHSLFELRSCILNGTVMLDMRASTLDEIADMVLDNMIASGQLD
ESIRENVREALLKRHHHQNEKRFTSRIPLVRSFADIGEGLSASRHSLRTGLSASNLSLRGESPLSLLLGH
LLPSSRAGTPAGSRCTTPVPTPQNSPPSSPSISRLTSRSSQESQRQAPELLVSPASDDIPTVVIHPPEED
LEAALKGEEQKNEENVDLTPGILASPQSAPGNLDNSKSGEIKGNGSGGSRENSTVDFSKVDMNFMRKIPT
GAEASNVLVGEVDFLERPIIAFVRLAPAVLLTGLTEVPVPTRFLFLLLGPAGKAPQYHEIGRSIATLMTD
EIFHDVAYKAKDRNDLLSGIDEFLDQVTVLPPGEWDPSIRIEPPKSVPSQEKRKIPVFHNGSTPTLGETP
KEAAHHAGPELQRTGRLFGGLILDIKRKAPFFLSDFKDALSLQCLASILFLYCACMSPVITFGGLLGEAT
EGRISAIESLFGASLTGIAYSLFAGQPLTILGSTGPVLVFEKILYKFCRDYQLSYLSLRTSIGLWTSFLC
IVLVATDASSLVCYITRFTEEAFAALICIIFIYEALEKLFDLGETYAFNMHNNLDKLTSYSCVCTEPPNP
SNETLAQWKKDNITAHNISWRNLTVSECKKLRGVFLGSACGHHGPYIPDVLFWCVILFFTTFFLSSFLKQ
FKTKRYFPTKVRSTISDFAVFLTIVIMVTIDYLVGVPSPKLHVPEKFEPTHPERGWIISPLGDNPWWTLL
IAAIPALLCTILIFMDQQITAVIINRKEHKLKKGAGYHLDLLMVGVMLGVCSVMGLPWFVAATVLSISHV
NSLKVESECSAPGEQPKFLGIREQRVTGLMIFILMGLSVFMTSVLKFIPMPVLYGVFLYMGVSSLKGIQL
FDRIKLFGMPAKHQPDLIYLRYVPLWKVHIFTVIQLTCLVLLWVIKVSAAAVVFPMMVLALVFVRKLMDL
CFTKRELSWLDDLMPESKKKKEDDKKKKEKEEAERMLQDDDDTVHLPFEGGSLLQIPVKALKYSPDKPVS
VKISFEDEPRKKYVDAETSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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