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Report for CCDS82779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82779.1 Public Homo sapiens 3 SEMA3F 24 110 108 CCDS HistoryNCBI Gene:6405Re-query CCDS DB by CCDS ID:82779.1Re-query CCDS DB by GeneID:6405See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82779.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434342.5 ENSP00000409859.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434342.5Link to Ensembl Protein Viewer:ENSP00000409859.1Re-query CCDS DB by Nucleotide ID:ENST00000434342Re-query CCDS DB by Protein ID:ENSP00000409859
Original member Current member NCBI NM_001318800.2 NP_001305729.1 Accepted alive Link to Nucleotide Sequence:NM_001318800.2Link to Protein Sequence:NP_001305729.1Re-query CCDS DB by Nucleotide ID:NM_001318800Re-query CCDS DB by Protein ID:NP_001305729Link to BLAST:NP_001305729.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305729.1 754 Q13275-2 754 100% 0 0

Chromosomal Locations for CCDS 82779.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 50159623 50159734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50173793 50173953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50174052 50174114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50174231 50174350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50176768 50176861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50182284 50182403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50182644 50182783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50182904 50183018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50183186 50183255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50183420 50183564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50184592 50184814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50185443 50185531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50185666 50185707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50185889 50186046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50186281 50186348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50186613 50186746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 50187705 50188115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGCTTGTCGCCGGTCTTCTTCTCTGGGCTTCCCTACTGACCGGGGCCTGGCCATCCTTCCCCACCCAGG
ACCACCTCCCGGCCACGCCCCGGGTCCGGCTCTCATTCAAAGAGCTGAAGGCCACAGGCACCGCCCACTT
CTTCAACTTCCTGCTCAACACAACCGACTACCGAATCTTGCTCAAGGACGAGGACCACGACCGCATGTAC
GTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCACGACATCAACCGCGAGCCCCTCATTATACACT
GGGCAGCCTCCCCACAGCGCATCGAGGAATGCGTGCTCTCAGGCAAGGATGTCAACGGCGAGTGTGGGAA
CTTCGTCAGGCTCATCCAGCCCTGGAACCGAACACACCTGTATGTGTGCGGGACAGGTGCCTACAACCCC
ATGTGCACCTATGTGAACCGCGGACGCCGCGCCCAGGATTACATCTTCTACCTGGAGCCTGAGCGACTCG
AGTCAGGGAAGGGCAAGTGTCCGTACGATCCCAAGCTGGACACAGCATCGGCCCTCATCAATGAGGAGCT
CTATGCTGGTGTGTACATCGATTTTATGGGCACTGATGCAGCCATCTTCCGCACACTTGGAAAGCAGACA
GCCATGCGCACGGATCAGTACAACTCCCGGTGGCTGAACGACCCGTCGTTCATCCATGCTGAGCTCATTC
CTGACAGTGCGGAGCGCAATGATGATAAGCTTTACTTCTTCTTCCGTGAGCGGTCGGCAGAGGCGCCGCA
GAGCCCCGCGGTGTACGCCCGCATCGGGCGCATTTGCCTGAACGATGACGGTGGTCACTGTTGCCTGGTC
AACAAGTGGAGCACATTCCTGAAGGCGCGGCTCGTCTGCTCTGTCCCGGGCGAGGATGGCATTGAGACTC
ACTTTGATGAGCTCCAGGACGTGTTTGTCCAGCAGACCCAGGACGTGAGGAACCCTGTCATTTACGCTGT
CTTTACCTCCTCTGGCTCCGTGTTCCGAGGCTCTGCCGTGTGTGTCTACTCCATGGCTGATATTCGCATG
GTCTTCAACGGGCCCTTTGCCCACAAAGAGGGGCCCAACTACCAGTGGATGCCCTTCTCAGGGAAGATGC
CCTACCCACGGCCGGGCACGTGCCCTGGTGGAACCTTCACGCCATCTATGAAGTCCACCAAGGATTATCC
TGATGAGGTGATCAACTTCATGCGCAGCCACCCACTCATGTACCAGGCCGTGTACCCTCTGCAGCGGCGG
CCCCTGGTAGTCCGCACAGGTGCTCCCTACCGCCTTACCACTATTGCCGTGGACCAGGTGGATGCAGCCG
ACGGGCGCTATGAGGTGCTTTTCCTGGGCACAGACCGCGGGACAGTGCAGAAGGTCATTGTGCTGCCCAA
GGATGACCAGGAGTTGGAGGAGCTCATGCTGGAGGAGGTGGAGGTCTTCAAGGATCCAGCACCCGTCAAG
ACCATGACCATCTCTTCTAAGAGGCAACAACTCTACGTGGCGTCAGCCGTGGGTGTCACACACCTGAGCC
TGCACCGCTGCCAGGCGTATGGGGCTGCCTGTGCTGACTGCTGCCTTGCCCGGGACCCTTACTGTGCCTG
GGATGGCCAGGCCTGCTCCCGCTATACAGCATCCTCCAAGAGGCGGAGCCGCCGGCAGGACGTCCGGCAC
GGAAACCCCATCAGGCAGTGCCGTGGGTTCAACTCCAATGCCAACAAGAATGCCGTGGAGTCTGTGCAGT
ATGGCGTGGCCGGCAGCGCAGCCTTCCTTGAGTGCCAGCCCCGCTCGCCCCAAGCCACTGTTAAGTGGCT
GTTCCAGCGAGATCCTGGTGACCGGCGCCGAGAGATTCGTGCAGAGGACCGCTTCCTGCGCACAGAGCAG
GGCTTGTTGCTCCGTGCACTGCAGCTCAGCGATCGTGGCCTCTACTCCTGCACAGCCACTGAGAACAACT
TTAAGCACGTCGTCACACGAGTGCAGCTGCATGTACTGGGCCGGGACGCCGTCCATGCTGCCCTCTTCCC
ACCACTGTCCATGAGCGCCCCGCCACCCCCAGGCGCAGGCCCCCCAACGCCTCCTTACCAGGAGTTAGCC
CAGCTGCTGGCCCAGCCAGAAGTGGGCCTCATCCACCAGTACTGCCAGGGTTACTGGCGCCATGTGCCCC
CCAGCCCCAGGGAGGCTCCAGGGGCACCCCGGTCTCCTGAGCCCCAGGACCAGAAAAAGCCCCGGAACCG
CCGGCACCACCCTCCGGACACATGA

Translation (754 aa):
MLVAGLLLWASLLTGAWPSFPTQDHLPATPRVRLSFKELKATGTAHFFNFLLNTTDYRILLKDEDHDRMY
VGSKDYVLSLDLHDINREPLIIHWAASPQRIEECVLSGKDVNGECGNFVRLIQPWNRTHLYVCGTGAYNP
MCTYVNRGRRAQDYIFYLEPERLESGKGKCPYDPKLDTASALINEELYAGVYIDFMGTDAAIFRTLGKQT
AMRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFRERSAEAPQSPAVYARIGRICLNDDGGHCCLV
NKWSTFLKARLVCSVPGEDGIETHFDELQDVFVQQTQDVRNPVIYAVFTSSGSVFRGSAVCVYSMADIRM
VFNGPFAHKEGPNYQWMPFSGKMPYPRPGTCPGGTFTPSMKSTKDYPDEVINFMRSHPLMYQAVYPLQRR
PLVVRTGAPYRLTTIAVDQVDAADGRYEVLFLGTDRGTVQKVIVLPKDDQELEELMLEEVEVFKDPAPVK
TMTISSKRQQLYVASAVGVTHLSLHRCQAYGAACADCCLARDPYCAWDGQACSRYTASSKRRSRRQDVRH
GNPIRQCRGFNSNANKNAVESVQYGVAGSAAFLECQPRSPQATVKWLFQRDPGDRRREIRAEDRFLRTEQ
GLLLRALQLSDRGLYSCTATENNFKHVVTRVQLHVLGRDAVHAALFPPLSMSAPPPPGAGPPTPPYQELA
QLLAQPEVGLIHQYCQGYWRHVPPSPREAPGAPRSPEPQDQKKPRNRRHHPPDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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