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Report for CCDS83035.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83035.1 Public Homo sapiens 5 SLC36A1 24 110 108 CCDS HistoryNCBI Gene:206358Re-query CCDS DB by CCDS ID:83035.1Re-query CCDS DB by GeneID:206358See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 83035.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616007.4 ENSP00000480948.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616007.4Link to Ensembl Protein Viewer:ENSP00000480948.1Re-query CCDS DB by Nucleotide ID:ENST00000616007Re-query CCDS DB by Protein ID:ENSP00000480948
Original member Current member NCBI NM_001308150.2 NP_001295079.1 Accepted alive Link to Nucleotide Sequence:NM_001308150.2Link to Protein Sequence:NP_001295079.1Re-query CCDS DB by Nucleotide ID:NM_001308150Re-query CCDS DB by Protein ID:NP_001295079Link to BLAST:NP_001295079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001295079.1 386 Q7Z2H8-3 386 100% 0 0

Chromosomal Locations for CCDS 83035.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 151458793 151458935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151463553 151463643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151464514 151464602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151465074 151465169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151467199 151467283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151467707 151467925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151473673 151473771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151476590 151476756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151479320 151479489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 151480057 151480058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGTCCACGCAGAGACTTCGGAATGAAGACTACCACGACTACAGCTCCACGGACGTGAGCCCTGAGGAGA
GCCCGTCGGAAGGCCTCAACAACCTCTCCTCCCCGGGCTCCTACCAGCGCTTTGGTCAAAGCAATAGCAC
AACATGGTTCCAGACCTTGATCCACCTGTTAAAAGGCAACATTGGCACAGGACTCCTGGGACTCCCTCTG
GCGGTGAAAAATGCAGGCATCGTGATGGGTCCCATCAGCCTGCTGATCATAGGCATCGTGGCCGTGCACT
GCATGGGTATCCTGGTGAAATGTGCTCACCACTTCTGCCGCAGGCTGAATAAATCCTTTGTGGATTATGG
TGATACTGTGATGTATGGACTAGAATCCAGCCCCTGCTCCTGGCTCCGGAACCACGCACACTGGGGAAGA
CGTGTTGTGGACTTCTTCCTGATTGTCACCCAGCTGGGATTCTGCTGTGTCTATTTTGTGTTTCTGGCTG
ACAACTTTAAACAGGTGATAGAAGCGGCCAATGGGACCACCAATAACTGCCACAACAATGAGACGGTGAT
TCTGACGCCTACCATGGACTCGCGACTCTACATGCTCTCCTTCCTGCCCTTCCTGGTGCTGCTGGTTTTC
ATCAGGAACCTCCGAGCCCTGTCCATCTTCTCCCTGTTGGCCAACATCACCATGCTGGTCAGCTTGGTCA
TGATCTACCAGTTCATTGTTCAGAGGATCCCAGACCCCAGCCACCTCCCCTTGGTGGCCCCTTGGAAGAC
CTACCCTCTCTTCTTTGGCACAGCGATTTTTTCATTTGAAGGCATTGGAATGGTTCTGCCCCTGGAAAAC
AAAATGAAGGATCCTCGGAAGTTCCCACTCATCCTGTACCTGGGCATGGTCATCGTCACCATCCTCTACA
TCAGCCTGGGGTGTCTGGGGTACCTGCAATTTGGAGCTAATATCCAAGGCAGCATAACCCTCAACCTGCC
CAACTGCTGGTTGTACCAGTCAGTTAAGCTGCTGTACTCCATCGGGATCTTTTTCACCTACGCACTCCAG
TTCTACGTCCCGGCTGAGATCATCATCCCCTTCTTTGTGTCCCGAGCGCCCGAGCACTGTGAGTTAGTGG
TGGACCTGTTTGTGCGCACAGTGCTGGTCTGCCTGACATGA

Translation (386 aa):
MSTQRLRNEDYHDYSSTDVSPEESPSEGLNNLSSPGSYQRFGQSNSTTWFQTLIHLLKGNIGTGLLGLPL
AVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGR
RVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVF
IRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLEN
KMKDPRKFPLILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQ
FYVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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