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Report for CCDS83050.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83050.1 Public Homo sapiens 5 UIMC1 24 110 108 CCDS HistoryNCBI Gene:51720Re-query CCDS DB by CCDS ID:83050.1Re-query CCDS DB by GeneID:51720See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83050.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000506128.5 ENSP00000427480.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000506128.5Link to Ensembl Protein Viewer:ENSP00000427480.1Re-query CCDS DB by Nucleotide ID:ENST00000506128Re-query CCDS DB by Protein ID:ENSP00000427480
Original member Current member NCBI NM_001317961.1 NP_001304890.1 Accepted alive Link to Nucleotide Sequence:NM_001317961.1Link to Protein Sequence:NP_001304890.1Re-query CCDS DB by Nucleotide ID:NM_001317961Re-query CCDS DB by Protein ID:NP_001304890Link to BLAST:NP_001304890.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001304890.1 553 Q96RL1-2 553 100% 0 0

Chromosomal Locations for CCDS 83050.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 176905282 176905492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176906011 176906047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176907114 176907177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176908523 176908694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176911311 176911389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176943335 176943488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176951474 176951577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176955959 176956035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176958093 176958154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176969053 176969291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176969601 176969706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176970742 176970866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176975396 176975480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 176982469 176982615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1662 nt):
ATGCCACGGAGAAAGAAAAAAGTTAAAGAAGTCTCCGAATCTCGGAACCTGGAGAAGAAGGATGTGGAAA
CTACCAGTTCTGTCAGTGTGAAGAGGAAGCGTAGACTTGAGGATGCATTCATTGTGATATCCGATAGTGA
TGGAGAGGAACCAAAGGAGGAAAATGGGTTGCAGAAAACGAAGACAAAACAGTCGAATAGAGCAAAGTGT
TTGGCCAAAAGAAAAATCGCACAGATGACAGAAGAAGAACAGTTTGCTCTGGCTCTCAAAATGAGTGAGC
AGGAAGCTAGGGAGGTGAACAGCCAGGAGGAGGAAGAAGAGGAGCTCTTGAGGAAAGCCATTGCTGAAAG
CCTGAATAGTTGCCGGCCTTCTGATGCTTCCGCTACCAGATCTCGACCTCTGGCCACTGGACCGTCTTCC
CAGTCCCATCAAGAGAAAACCACAGACTCTGGGCTCACTGAAGGCATATGGCAGCTGGTACCTCCATCAC
TGTTTAAAGGCTCACATATCAGTCAGGGAAACGAGGCTGAGGAAAGAGAGGAGCCTTGGGACCACACTGA
AAAAACTGAAGAGGAGCCGGTCTCTGGCAGCTCAGGAAGCTGGGACCAGTCAAGCCAGCCAGTGTTTGAG
AATGTGAACGTTAAATCTTTTGACAGATGTACTGGCCACTCGGCTGAGCACACACAGTGTGGGAAGCCAC
AGTCTTCCCAAGGGATTGTTGAAGAAACTTCTGAAGAGGGAAACTCTGTACCTGCTTCACAAAGTGTTGC
TGCTTTGACCAGTAAGAGAAGCTTAGTCCTTATGCCAGAGAGTTCTGCAGAAGAAATCACTGTTTGTCCT
GAGACCCAGCTAAGTTCCTCTGAAACTTTTGACCTTGAAAGAGAAGTCTCTCCAGGTAGCAGAGATATCT
TGGATGGAGTCAGAATAATAATGGCAGATAAGGAGGTTGGTAACAAGGAAGATGCTGAGAAGGAAGTAGC
TATTTCTACCTTCTCATCCAGTAACCAGGTATCCTGCCCGCTATGTGACCAATGCTTTCCACCCACAAAG
ATTGAACGACATGCCATGTACTGCAATGGTCTGATGGAGGAAGATACAGTATTGACTCGGAGACAAAAAG
AGGCCAAGACCAAGAGTGACAGTGGGACAGCTGCCCAGACTTCTCTAGACATTGACAAGAATGAGAAGTG
TTACCTCTGTAAATCCCTGGTCCCATTTAGAGAGTATCAGTGTCATGTGGACTCCTGTCTCCAGCTTGCA
AAGGCTGACCAAGGAGATGGACCTGAAGGGAGTGGAAGAGCATGTTCAACTGTGGAGGGGAAGTGGCAGC
AGAGGCTGAAGAACCCAAAGGAAAAAGGCCACAGTGAAGGCCGACTCCTTAGTTTCTTGGAACAGTCTGA
GCACAAGACTTCAGATGCAGACATCAAGTCTTCAGAAACAGGAGCCTTCAGGGTGCCTTCACCAGGGATG
GAAGAGGCAGGCTGCAGCAGAGAGATGCAGAGTTCTTTCACACGTCGTGACTTAAATGAATCTCCCGTCA
AGTCTTTTGTTTCCATTTCAGAAGCCACAGATTGCTTAGTGGACTTTAAAAAGCAAGTTACTGTCCAGCC
AGGTAGTCGGACACGGACCAAAGCTGGCAGAGGAAGAAGGAGAAAATTCTGA

Translation (553 aa):
MPRRKKKVKEVSESRNLEKKDVETTSSVSVKRKRRLEDAFIVISDSDGEEPKEENGLQKTKTKQSNRAKC
LAKRKIAQMTEEEQFALALKMSEQEAREVNSQEEEEEELLRKAIAESLNSCRPSDASATRSRPLATGPSS
QSHQEKTTDSGLTEGIWQLVPPSLFKGSHISQGNEAEEREEPWDHTEKTEEEPVSGSSGSWDQSSQPVFE
NVNVKSFDRCTGHSAEHTQCGKPQSSQGIVEETSEEGNSVPASQSVAALTSKRSLVLMPESSAEEITVCP
ETQLSSSETFDLEREVSPGSRDILDGVRIIMADKEVGNKEDAEKEVAISTFSSSNQVSCPLCDQCFPPTK
IERHAMYCNGLMEEDTVLTRRQKEAKTKSDSGTAAQTSLDIDKNEKCYLCKSLVPFREYQCHVDSCLQLA
KADQGDGPEGSGRACSTVEGKWQQRLKNPKEKGHSEGRLLSFLEQSEHKTSDADIKSSETGAFRVPSPGM
EEAGCSREMQSSFTRRDLNESPVKSFVSISEATDCLVDFKKQVTVQPGSRTRTKAGRGRRRKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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