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Report for CCDS83085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83085.1 Public Homo sapiens 6 MED20 24 110 108 CCDS HistoryNCBI Gene:9477Re-query CCDS DB by CCDS ID:83085.1Re-query CCDS DB by GeneID:9477See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000409312.5 ENSP00000386816.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409312.5Link to Ensembl Protein Viewer:ENSP00000386816.1Re-query CCDS DB by Nucleotide ID:ENST00000409312Re-query CCDS DB by Protein ID:ENSP00000386816
Original member Current member NCBI NM_001305457.2 NP_001292386.1 Accepted alive Link to Nucleotide Sequence:NM_001305457.2Link to Protein Sequence:NP_001292386.1Re-query CCDS DB by Nucleotide ID:NM_001305457Re-query CCDS DB by Protein ID:NP_001292386Link to BLAST:NP_001292386.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001292386.1 123 Q9H944-2 123 100% 0 0

Chromosomal Locations for CCDS 83085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 41907263 41907287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41909345 41909522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41916785 41916939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 41921005 41921018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (372 nt):
ATGGGAGTGACTTGTGTGTCCCAGATGCCTGTGGCCGAGGGCAAGAGTGTTCAGCAAACCGTAGAGCTCC
TTACCCGGAAATTGGAGATGCTTGGGGCAGAGAAGCAAGGAACATTTTGTGTGGACTGTGAGACTTACCA
TACGGCCGCCTCTACCCTTGGCAGCCAAGGTCAGACCGGGAAGCTGATGTATGTGATGCACAACTCAGAG
TACCCATTGAGCTGTTTCGCCCTCTTTGAGAATGGCCCTTGCCTTATTGCTGACACCAACTTTGATGTGC
TTATGGTGAAGCTCAAGGGCTTTTTCCAGAGTGCTAAGGCCAGCAAGATTGAGACCCGGGGCACCAGGTG
GAGTATGGCCCCTGTGTGGTAG

Translation (123 aa):
MGVTCVSQMPVAEGKSVQQTVELLTRKLEMLGAEKQGTFCVDCETYHTAASTLGSQGQTGKLMYVMHNSE
YPLSCFALFENGPCLIADTNFDVLMVKLKGFFQSAKASKIETRGTRWSMAPVW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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