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Report for CCDS8340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8340.1 Public Homo sapiens 11 C11orf65 24 110 108 CCDS HistoryNCBI Gene:160140Re-query CCDS DB by CCDS ID:8340.1Re-query CCDS DB by GeneID:160140See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393084.6 ENSP00000376799.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393084.6Link to Ensembl Protein Viewer:ENSP00000376799.1Re-query CCDS DB by Nucleotide ID:ENST00000393084Re-query CCDS DB by Protein ID:ENSP00000376799
Original member Current member EBI ENST00000527531.5 ENSP00000431706.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527531.5Link to Ensembl Protein Viewer:ENSP00000431706.1Re-query CCDS DB by Nucleotide ID:ENST00000527531Re-query CCDS DB by Protein ID:ENSP00000431706
Original member Current member EBI ENST00000529391.5 ENSP00000436400.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529391.5Link to Ensembl Protein Viewer:ENSP00000436400.1Re-query CCDS DB by Nucleotide ID:ENST00000529391Re-query CCDS DB by Protein ID:ENSP00000436400
Original member Current member EBI ENST00000615746.4 ENSP00000483537.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615746.4Link to Ensembl Protein Viewer:ENSP00000483537.1Re-query CCDS DB by Nucleotide ID:ENST00000615746Re-query CCDS DB by Protein ID:ENSP00000483537
Original member Current member NCBI NM_152587.5 NP_689800.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152587.5Link to Protein Sequence:NP_689800.3Re-query CCDS DB by Nucleotide ID:NM_152587Re-query CCDS DB by Protein ID:NP_689800Link to BLAST:NP_689800.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689800.3 313 Q8NCR3-1 313 100% 0 0

Chromosomal Locations for CCDS 8340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 108383021 108383175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108385920 108385975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108393208 108393378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108405429 108405559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108406763 108406963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108407096 108407149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108431746 108431838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108461479 108461559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGCCTTGGAAAGAGGAATCAGAATTTACAAAGCAGGATAAGGCTGCCAGAGTCATTCAGCAGGCCTGGA
AAAGTTTCCTTAATGTCGCTATATTTCAACACTTTAAAAGTCTGATTGATTTAAGAAGACAAGGAGAACC
ACGTCAGATAGTGAAATATATTAATCCCAAAGAGGCAGAGCTTCTAGATGCTGCTGCTGGCATTCATGTG
CGATTCAGATTAGGTGGAGTTAAATTTCCACCTGATATATACTATAAGATTTTTACTCACAGACCTATTG
AAGATCTCTGTGCTAACAGCCCTAGAAATTATGCAAAACTTCCAGCAAAGCATACATCTCATAATAAAAA
TGATCATCTTCAGGAAGAGGATCATAGTGGCTGGTATCATCGTATAGAAAACAATGGCTGGAGGCCAGTT
TCTGATACATTTTGGCTATCTACTGATGGTATGGTGGTGGAAGACAAAAAGGAAAGTGAATTCCATTTCT
CTAAACTGAAGAGAAGGCAAGATTTGGAAAAGAAAAGAAAACTTAGAAAAATAGAGTGGATGAGGCAAAT
GTACTACTCAGGAAGTCTGGAGGCTAAGTCAACACATCATGAAACTCTAGGACTAATTCACACTGCAACA
AAGGGGCTGATTAGAGCTTTTGAAGATGGGGGGATAGATTCTGTGATGGAATGGGAAGTGGATGAAGTGC
TGAACTGGACAAATACACTGAACTTTGATGAGTACATTGCCAGCTGGAAGGAAATTGCTACAAGCAACTC
TTCGGCTAACTTCAAAGGATTCAGGTTTAATCAAGCACAGAAAAACATATATAACTATGGAGGAGACATA
TCAAAGATGCAAATGGGAATACCAGATGATACTTACTATGAAAATGTTTATCAAGAACCAAATGTAACTA
GATTAACGCCTGATTCTACTTATGGACTATAA

Translation (313 aa):
MPWKEESEFTKQDKAARVIQQAWKSFLNVAIFQHFKSLIDLRRQGEPRQIVKYINPKEAELLDAAAGIHV
RFRLGGVKFPPDIYYKIFTHRPIEDLCANSPRNYAKLPAKHTSHNKNDHLQEEDHSGWYHRIENNGWRPV
SDTFWLSTDGMVVEDKKESEFHFSKLKRRQDLEKKRKLRKIEWMRQMYYSGSLEAKSTHHETLGLIHTAT
KGLIRAFEDGGIDSVMEWEVDEVLNWTNTLNFDEYIASWKEIATSNSSANFKGFRFNQAQKNIYNYGGDI
SKMQMGIPDDTYYENVYQEPNVTRLTPDSTYGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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