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Report for CCDS83550.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83550.1 Public Mus musculus 1 Map2 23 108 98 CCDS HistoryNCBI Gene:17756Re-query CCDS DB by CCDS ID:83550.1Re-query CCDS DB by GeneID:17756See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83550.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114013.7 ENSMUSP00000109646.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114013.7Link to Ensembl Protein Viewer:ENSMUSP00000109646.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114013Re-query CCDS DB by Protein ID:ENSMUSP00000109646
Original member Current member NCBI NM_001310634.1 NP_001297563.1 Accepted alive Link to Nucleotide Sequence:NM_001310634.1Link to Protein Sequence:NP_001297563.1Re-query CCDS DB by Nucleotide ID:NM_001310634Re-query CCDS DB by Protein ID:NP_001297563Link to BLAST:NP_001297563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001297563.1 1828 P20357 1828 100% 0 0

Chromosomal Locations for CCDS 83550.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 66380512 66380773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66399389 66399502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66401444 66401521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66412407 66416147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66416344 66416550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66416732 66416866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66420135 66420196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66421646 66421790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66425197 66425528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66433514 66433595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66438254 66438366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 66438792 66439007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5487 nt):
ATGGCCGACGAGCGGAAAGATGAAGGAAAGGCACCACACTGGACATCAGCCTCACTCACAGAGGCAGCTG
CACACCCTCACTCTCCAGAGATGAAGGACCAGGGTGGGGCAGGGGAAGGGCTGAGCCGCAACGCCAATGG
ATTTCCATACAGAGAGGAGGAGGAAGGCGCCTTTGGGGAGCACAGGTCACAGGGCACCTATTCAGATACC
AAAGAGAACGGGATCAACGGAGAGCTGACCTCAGCTGACAGAGAAACAGCAGAGGAGGTATCTGCAAGGA
TAGTTCAAGTAGTCACAGCTGAAGCTGTAGCAGTCCTGAAAGGTGAACAAGAGAAGGAAGCCCAACACAA
GGACCAGCCTGCAGCTCTGCCTCTAGCAGCCGAAGAAACAGCTAATCTGCCACCTTCGCCACCACCATCG
CCAGCCTCAGAACAAACAGCCACAGTGGAGGAAGATTTACTTACAGCCTCGAAGATGGAATTCCCTGAGC
AGGAGAAATTTCCTTCCTCATTCGCTGAGCCTTTAGACAAGGGAGAAATGGAGTTTAAGATGCCAAGTAA
GCCTGGTGAAGACTTTGAACATGCTGCCTTAGTTCCTGACACAAGTAAAACTCCTCAGGATAAAAAGGAT
CTCCAAGGCATGGAAGGAGAAAAGTTGCCTCCAGTTCCATTTGCGCAGACTTTCGGTACCAACCTGGAAG
ACAGAAAACAGAGCACAGAACCAAGCATAGTGATGCCTAGCATTGGCCTCTCGGCAGAGCCCCCAGCTCC
AAAAGAGCCAAAAGACTGGTTCATTGAAATGCCCACGGAATCAAAGAAGGATGAATGGGGTTTAGCTGCC
CCAATATCTCCTGGCCCCTTGACACCCATGAGGGAAAAAGATGTGCTAGAGGATATCCCAAGATGGGAAG
GGAAGCAGTTTGACTCTCCCATGCCAAGCCCCTTCCATGGTGGAAGTTTCACTCTTCCCTTAGACACTAT
GAAGAATGAGAGAGTCTCAGAAGGACCACGACCCTTTGCCCCTGTCTTCTTCCAATCAGATGACAAAGTG
TCTCTGCAGGACCCCAGTGCTCTAGCTACTTCCAAAGAGAGTTCTAAAGATGAGGAGCCACTGAAAGATA
AAGCAGACAAAGTGGCAGATGTTTCCATCTCAGAAGTTACCACTTTACTGGGAAATGTTCATAGTCCAGT
TGTGGAAGGCTATGTTGGGGAGAACATTTCAGGAGAAGTAAAGGTTACCACAGATCAAGAGAAAAAGGAG
ACTTCTGCACCCAGTGTACAGGAACCTACACTCACTGAAACTGAACCACAGACAAAGCTTGATGAGAAAT
CAACTGTTTCTATCGAAGAAGCTGTGGCAAAAAAAGAGGAATCCTTTAAACTAAGAGATGATAAAACAGG
TGTAATTCAGACTTCCACCGAGCAGTCTTTCTCCAAGGAAGACCAGAAAGGCCAAGAACACACGATTGAT
GAGTTAAAACAAGACTCCTTCCCTATAAGTCTGGAACAAGCAGTTACAGATGCAGCCATGACCTCCAAGA
CCTTGGGAAAAGTTACATCTGAGCCAGAGGCAGTAAGTGAAAGGAGAGAAATCCAGGGACTTTTTGAAGA
GAAAACAGCTGACAAAAATAAGCTTGAAGGCGCTGGATCTGCGACAATAGCCGAGGTTGAGATGCCGTTT
TATGAAGATAAATCAGGGATGTCTAAGTACTTTGAAACATCTGCATTGAAAGAAGACATGACGAGAAGCA
CTGAGTTGGGCAGTGATTACTATGAGCTGAGTGACTCCAGAGGAAGTGCCCAGGAATCTCTTGATACTAT
ATCTCCTAAGAACCAACATGATGAAAAGGAACTTCAGGCAAAAGCATCCCAGCCTAGTCCTCCAGCACAG
GAAGCAGGGTACAGCACTCTTGCTCAGAGTTATACACCCGATCATCCATCCGAGTTACCTGAAGAACCAA
GTTCTCCTCAAGAGAGAATGTTCACTATTGACCCCAAAGTTTATGGAGAGAAAAGGGACCTTCATAGTAA
GAATAAGGACGATCTGACACTTAGTCGAAGCTTAGGGCTTGGTGGAAGGTCTGCAATAGAACAAAGAAGC
ATGTCTATCAACTTGCCTATGTCTTGCCTTGATTCCATTGCCCTTGGGTTTAACTTTGGCCGGGGCCATG
ATCTTTCCCCTCTGGCTTCTGATATTCTAACCAACACTAGTGGAAGCATGGATGAAGGAGATGATTACCT
GCCCCCCACCACACCTGCAGTGGAGAAGATGCCTTGCTTTCCTATAGAGAGCAAAGAGGAAGAAGATAAA
GCAGAGCAAGCAAAAGTGACTGGAGGGCAAACTATCCAAGTTGAAACATCCTCAGAGTCACCCTTTCCAG
CCAAAGAATATTACAAAAATGGTACTGTCATGGCCCCTGACCTGCCCGAGATGCTAGATCTGGCAGGAAC
CAGGTCCAGATTAGCTTCTGTGAGTGCAGATGCTGAGGTTGCCAGGAGGAAATCAGTCCCATCAGAGGCT
ATGCTTGCAGAGAGTAGTACCAGTTTGCCACCTGTCGCTGATGAAAGCCCAGTCACTGTAAAACCAGATA
GTCAACTTGAAGACATGGGATACTGTGTGTTCAACAAGTACACAGTCCCTCTCCCATCACCAGTTCAAGA
CAGTGAGAATTTGTCAGGAGAGAGTGGTTCATTTTATGAAGGAACCGATGACAAAGTCCGTAGAGATTTG
GCCACCGACCTTTCACTAATTGAAGTAAAACTTGCAGCTGCTGGAAGAGTCAAAGATGAGTTCACTGCTG
AGAAAGAGGCATCTCCACCCACTTCTGCTGACAAATCAAGACTGAGTAGGGAGTTTGACCATGACAGGAA
AGCTAATGACAAGCTGGATACTGTCCTAGAAAAGAGTGAAGAGCATATTGATTCAAAAGAACATGCCAAG
GAGTCAGAAGAGATGGGGGGTAAAGTAGAGCTCTTTGGATTAGGTATAACTTATGATCAAGCCTCCACCA
AAGAACTGATAACAACTAAGGATACATCACCTGAGAAAACAGAGAAAGGTCTCAGTTCAGTGCCAGAGGT
AGCTGAGGTCGAGCCAACCACAAAAGCTGATCAAGGTCTAGATTTTGCTGCAACGAAAGCTGAGCCAAGT
CAGTTAGATATAAAAGTCAGTGACTTTGGACAGATGGCTTCTGGGATGAATGTAGATGCTGGGAAAGCCA
TAGAGCTTAAGTTTGAGGTTGCTCAGGAGCTGACGCTCTCATCCGAAGCACCTCAAGAAGCAGATTCCTT
CATGGGTGTTGAGTCCGGCCACATCAAGGAAGGTGGCAAAGTCAATGAAACAGAAGTCAAGGAAAAGGTG
ACAAAGCCTGATTTGGTGCATCAGGAGGCTGTAGACAAAGAAGAGTCCTATGAGTCTAGCGGTGAGCATG
AAAGCCTCACTATGGAGTCTCTGAAGCCTGATGAGGGCAAGAAAGAAACATCTCCAGAGACATCACTGAT
CCAAGATGAAGTTGCCCTCAAGCTGTCTGTAGAAATCCCTTGCCCGCCTCCAGTTTCCGAAGCTGATTTA
TCCACGGATGAGAAGGGTGAGGTCCAGATGGAATTCATTCAGCTGCCAAAGGAAGAGAGCACAGAGACTC
CGGATATACCTGCCATACCTTCTGATGTCACCCAGCCACAGCCTGAAGCCATTGTGTCCGAACCAGCAGA
GGTCCCAAGTGAGGAAGAAGAGATAGAAGCTGGGGGAGAGTATGACAAACTGCTCTTCCGCTCAGATACC
CTCCAGATCTCCGACCTGCTTGTTTCAGAAAGTAGGGAGGAGTTTGTGGAGACCTGCCCAGGTGAGCTCA
AAGGTGTGGTTGAGTCTGTGGTGACCATTGAGGATGATTTTATCACTGTAGTACAAACCACAACTGATGA
GGGGGAGTCGGGGTCCCACAGTGTGCGCTTCGCAGCTCCAGCTCAGCCGGAGGAAGAAAGGAGACCACGC
CCTCACGATGAAGAGCTTGAAATAGAGATGGCAGCAGAAGCCCAGGCAGAACCCAAGGATGGCTCTCCAG
ATGCTCCAGCTACCCCTGAGAAAGAAGAGGTTGCGTTCTCAGAATATAAAACAGAAACTTACGACGATTA
CAAAGACGAGACCACCATTGATGACTCCATTATGGACGCCGACAGCCTGTGGGTGGACACTCAAGATGAT
GATAGAAGCATCTTGACAGAGCAGTTAGAAACTATTCCTAAAGAGGAGAGAGCTGAGAAGGATGCTCGGA
GACCGTCTCTCGAGAAACATAGAAAAGAAAAGCCTTTTAAAACCGGGAGAGGCAGAATTTCCACTCCTGA
AAGAAAAGTAGCTAAAAAGGAACCTAGCACGGTCTCCAGGGATGAAGTGAGAAGGAAAAAAGCAGTTTAT
AAGAAGGCTGAACTTGCTAAAAAATCAGAAGTTCAGGCCCACTCTCCTTCCAGGAAACTCATTTTAAAAC
CTGCTATCAAATACACTAGACCAACTCATCTCTCCTGTGTTAAGCGGAAAACCACAGCAGCAAGTGGTGA
CTTGGCTCAGGCTCCTGGTGCTTTTAAACAGGCGAAGGATAAAGTCACTGATGGAATAAGCAAGAGCCCA
GAGAAACGTTCTTCCCTCCCAAGACCTTCCTCCATCCTCCCTCCTCGCAGGGGTGTATCAGGAGACAGGG
AGGAGAACTCTTTCTCTCTGAATAGCTCCATCTCTTCAGCACGACGGACCACCAGGTCAGAACCAATTCG
CAGAGCAGGAAAAAGTGGCACCTCCACACCTACTACCCCTGGATCAACTGCAATCACCCCTGGAACTCCC
CCAAGCTACTCTTCACGTACCCCAGGCACCCCGGGAACCCCGAGCTACCCCAGGACACCAGGAACCCCCA
AATCTGGCATCCTGGTGCCCAGTGAGAAGAAAGTTGCCATCATCCGCACTCCTCCAAAGTCCCCAGCTAC
TCCTAAGCAGCTTCGGCTTATTAACCAACCACTGCCGGACCTGAAGAATGTCAAGTCCAAAATCGGATCA
ACTGACAACATCAAATACCAGCCTAAGGGGGGTCAGGTACAAATTGTTACTAAGAAGATAGACTTAAGCC
ATGTGACATCCAAATGTGGCTCTCTAAAGAACATCCGTCACAGGCCAGGTGGTGGACGTGTGAAAATTGA
GAGTGTAAAACTGGATTTCAAGGAAAAGGCCCAAGCTAAAGTTGGCTCACTTGACAATGCTCACCACGTA
CCTGGAGGTGGTAATGTGAAGATTGACAGCCAAAAGTTGAACTTCAGAGAGCATGCAAAGGCCCGGGTAG
ATCACGGGGCTGAGATCATCACACAGTCCCCAAGCAGGTCCAGCGTGGCATCACCCCGACGACTCAGCAA
CGTCTCATCTTCTGGAAGCATCAACCTGCTCGAATCCCCTCAGCTTGCCACTTTGGCTGAGGATGTCACT
GCGGCGCTTGCTAAGCAGGGCTTGTGA

Translation (1828 aa):
MADERKDEGKAPHWTSASLTEAAAHPHSPEMKDQGGAGEGLSRNANGFPYREEEEGAFGEHRSQGTYSDT
KENGINGELTSADRETAEEVSARIVQVVTAEAVAVLKGEQEKEAQHKDQPAALPLAAEETANLPPSPPPS
PASEQTATVEEDLLTASKMEFPEQEKFPSSFAEPLDKGEMEFKMPSKPGEDFEHAALVPDTSKTPQDKKD
LQGMEGEKLPPVPFAQTFGTNLEDRKQSTEPSIVMPSIGLSAEPPAPKEPKDWFIEMPTESKKDEWGLAA
PISPGPLTPMREKDVLEDIPRWEGKQFDSPMPSPFHGGSFTLPLDTMKNERVSEGPRPFAPVFFQSDDKV
SLQDPSALATSKESSKDEEPLKDKADKVADVSISEVTTLLGNVHSPVVEGYVGENISGEVKVTTDQEKKE
TSAPSVQEPTLTETEPQTKLDEKSTVSIEEAVAKKEESFKLRDDKTGVIQTSTEQSFSKEDQKGQEHTID
ELKQDSFPISLEQAVTDAAMTSKTLGKVTSEPEAVSERREIQGLFEEKTADKNKLEGAGSATIAEVEMPF
YEDKSGMSKYFETSALKEDMTRSTELGSDYYELSDSRGSAQESLDTISPKNQHDEKELQAKASQPSPPAQ
EAGYSTLAQSYTPDHPSELPEEPSSPQERMFTIDPKVYGEKRDLHSKNKDDLTLSRSLGLGGRSAIEQRS
MSINLPMSCLDSIALGFNFGRGHDLSPLASDILTNTSGSMDEGDDYLPPTTPAVEKMPCFPIESKEEEDK
AEQAKVTGGQTIQVETSSESPFPAKEYYKNGTVMAPDLPEMLDLAGTRSRLASVSADAEVARRKSVPSEA
MLAESSTSLPPVADESPVTVKPDSQLEDMGYCVFNKYTVPLPSPVQDSENLSGESGSFYEGTDDKVRRDL
ATDLSLIEVKLAAAGRVKDEFTAEKEASPPTSADKSRLSREFDHDRKANDKLDTVLEKSEEHIDSKEHAK
ESEEMGGKVELFGLGITYDQASTKELITTKDTSPEKTEKGLSSVPEVAEVEPTTKADQGLDFAATKAEPS
QLDIKVSDFGQMASGMNVDAGKAIELKFEVAQELTLSSEAPQEADSFMGVESGHIKEGGKVNETEVKEKV
TKPDLVHQEAVDKEESYESSGEHESLTMESLKPDEGKKETSPETSLIQDEVALKLSVEIPCPPPVSEADL
STDEKGEVQMEFIQLPKEESTETPDIPAIPSDVTQPQPEAIVSEPAEVPSEEEEIEAGGEYDKLLFRSDT
LQISDLLVSESREEFVETCPGELKGVVESVVTIEDDFITVVQTTTDEGESGSHSVRFAAPAQPEEERRPR
PHDEELEIEMAAEAQAEPKDGSPDAPATPEKEEVAFSEYKTETYDDYKDETTIDDSIMDADSLWVDTQDD
DRSILTEQLETIPKEERAEKDARRPSLEKHRKEKPFKTGRGRISTPERKVAKKEPSTVSRDEVRRKKAVY
KKAELAKKSEVQAHSPSRKLILKPAIKYTRPTHLSCVKRKTTAASGDLAQAPGAFKQAKDKVTDGISKSP
EKRSSLPRPSSILPPRRGVSGDREENSFSLNSSISSARRTTRSEPIRRAGKSGTSTPTTPGSTAITPGTP
PSYSSRTPGTPGTPSYPRTPGTPKSGILVPSEKKVAIIRTPPKSPATPKQLRLINQPLPDLKNVKSKIGS
TDNIKYQPKGGQVQIVTKKIDLSHVTSKCGSLKNIRHRPGGGRVKIESVKLDFKEKAQAKVGSLDNAHHV
PGGGNVKIDSQKLNFREHAKARVDHGAEIITQSPSRSSVASPRRLSNVSSSGSINLLESPQLATLAEDVT
AALAKQGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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