NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS83677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83677.1 Reviewed, update pending Mus musculus 10 Pcmt1 23 108 98 CCDS HistoryNCBI Gene:18537Re-query CCDS DB by CCDS ID:83677.1Re-query CCDS DB by GeneID:18537See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 83677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000162606.7 ENSMUSP00000123866.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162606.7Link to Ensembl Protein Viewer:ENSMUSP00000123866.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162606Re-query CCDS DB by Protein ID:ENSMUSP00000123866
Original member NCBI NM_001347228.2 NP_001334157.1 Updated not alive Link to Nucleotide Sequence:NM_001347228.2Link to Protein Sequence:NP_001334157.1Re-query CCDS DB by Nucleotide ID:NM_001347228Re-query CCDS DB by Protein ID:NP_001334157
NCBI NM_001347228.3 NP_001334157.1 Updated not alive Link to Nucleotide Sequence:NM_001347228.3Link to Protein Sequence:NP_001334157.1Re-query CCDS DB by Nucleotide ID:NM_001347228Re-query CCDS DB by Protein ID:NP_001334157
NCBI NM_001347228.4 NP_001334157.2 Updated not alive Link to Nucleotide Sequence:NM_001347228.4Link to Protein Sequence:NP_001334157.2Re-query CCDS DB by Nucleotide ID:NM_001347228Re-query CCDS DB by Protein ID:NP_001334157
Current member NCBI NM_001347228.5 NP_001334157.2 Pending alive Link to Nucleotide Sequence:NM_001347228.5Link to Protein Sequence:NP_001334157.2Re-query CCDS DB by Nucleotide ID:NM_001347228Re-query CCDS DB by Protein ID:NP_001334157Link to BLAST:NP_001334157.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334157.2 228 P23506-2 228 100% 0 0

Chromosomal Locations for CCDS 83677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 7630964 7630976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7638056 7638225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7640045 7640130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7640695 7640815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7644325 7644429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7647590 7647621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7649051 7649155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 7663075 7663303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (861 nt):
ATGCCGGGAGCGCGCATTGGCGGCAGTGGCAGCGACGGCAGTAACAGCGGCCGCTCGAGCGGGGACACCA
GCGGGGCGGTGACCGTGTGGGAGGTGGTCTCACTCTTGGGGAAACTGCTAGGGACCGTCGCCGCGCTGAA
GGTGGTTCTGTACCTGCTCCGGGTGTGCTTCGCGATGGCCTGGAAATCCGGCGGCGCCAGCCACTCGGAG
CTAATCCACAACCTCCGCAAGAATGGAATCATCAAGACAGATAAAGTATTTGAAGTGATGCTGGCTACAG
ACCGTTCCCACTATGCAAAATCTAACCCTTACATGGATTCTCCACAATCAATAGGTTTCCAGGCAACAAT
CAGTGCCCCTCATATGCACGCATATGCACTAGAACTTCTGTTTGACCAGCTGCATGAAGGTGCTAAAGCC
CTGGACGTGGGCTCTGGAAGTGGAATCCTCACCGCCTGTTTTGCACGGATGGTTGGAAATAGTGGAAAAG
TCATTGGAATTGATCACATTAAAGAACTAGTAGATGACTCAATAACTAATGTCAAAAAGGATGACCCAAT
GCTCCTGTCCTCGGGGCGAGTGCGGCTGGTGGTGGGTGATGGAAGAATGGGATACGCTGAAGAAGCCCCT
TACGACGCTATTCATGTGGGAGCTGCAGCCCCAGTTGTGCCCCAGGCATTAATAGACCAGTTAAAGCCTG
GTGGAAGATTGATATTGCCAGTCGGTCCTGCAGGAGGAAACCAAATGTTGGAGCAGTATGACAAGCTACA
AGATGGCAGTGTCAAAATGAAACCTCTCATGGGGGTGATATACGTGCCTTTAACAGATAAAGAAAAGCAG
TGGTCCAGGGATGAACTGTGA

Translation (286 aa):
MPGARIGGSGSDGSNSGRSSGDTSGAVTVWEVVSLLGKLLGTVAALKVVLYLLRVCFAMAWKSGGASHSE
LIHNLRKNGIIKTDKVFEVMLATDRSHYAKSNPYMDSPQSIGFQATISAPHMHAYALELLFDQLHEGAKA
LDVGSGSGILTACFARMVGNSGKVIGIDHIKELVDDSITNVKKDDPMLLSSGRVRLVVGDGRMGYAEEAP
YDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQ
WSRDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH