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Report for CCDS83830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83830.1 Public Mus musculus 11 Ybx2 23 108 98 CCDS HistoryNCBI Gene:53422Re-query CCDS DB by CCDS ID:83830.1Re-query CCDS DB by GeneID:53422See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108601.2 ENSMUSP00000104242.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108601.2Link to Ensembl Protein Viewer:ENSMUSP00000104242.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108601Re-query CCDS DB by Protein ID:ENSMUSP00000104242
Original member NCBI NM_001347634.2 NP_001334563.1 Updated not alive Link to Nucleotide Sequence:NM_001347634.2Link to Protein Sequence:NP_001334563.1Re-query CCDS DB by Nucleotide ID:NM_001347634Re-query CCDS DB by Protein ID:NP_001334563
Current member NCBI NM_001347634.3 NP_001334563.1 Accepted alive Link to Nucleotide Sequence:NM_001347634.3Link to Protein Sequence:NP_001334563.1Re-query CCDS DB by Nucleotide ID:NM_001347634Re-query CCDS DB by Protein ID:NP_001334563Link to BLAST:NP_001334563.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334563.1 282 Q9Z2C8-2 282 99.6454% 0 1

Chromosomal Locations for CCDS 83830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69936423 69936465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69936897 69936960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69938342 69938375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69939238 69939327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69939874 69940158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69940328 69940431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69940590 69940767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69941046 69941096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAGCCGGAGGGCGGGGCAGGCAGGTTCAGCTAAGGCTTTGGCAATCCAAGTCCTGGGCACAGTCAAAT
GGTTCAACGTCCGGAATGGTTACGGATTCATCAACAGGAATGACACCAAGGAGGATGTCTTTGTTCACCA
GACAGCTATTAAGAGAAACAACCCCAGGAAGTTTCTGCGGAGTGTTGGAGATGGGGAGACTGTGGAGTTT
GATGTCGTGGAAGGAGAGAAGGGTGCAGAAGCTGCTAATGTCACTGGGCCTGGGGGGGTACCAGTGAAGG
GCAGCCGCTATGCCCCTAATCGACGTAGGTTCCGGAGGTTCATTCCTCGGCCTCGCCCAGCTGCCCCACC
ACCTATGGTGGCAGAGGCTCCCTCAGGTGGGACAGAACCTGGCAGCGAAGGGGAGCGGGCAGAGGACTCG
GGGCAGCGACCTAGACGACGGCGCCCACCACCCTTCTTCTATCGAAGGCGGTTTGTGCGAGGCCCTCGGC
CCCCCAACCAGCAACAGCCCATAGAGGGCTCTGATGGGGTAGAACCCAAGGAGACAGCACCATTGGAGGG
TGATCAACAGCAGGGAGATGAACGGGTGCCCCCACCCAGATTCCGGCCCAGGTACCGAAGGCCTTTCCGC
CCCAGGCCACCCCAACAGCCTACCACAGAAGGTGGGGATGGAGAGACCAAGCCCAGCCAAGGCCCCACTG
ATGGCTCCCGGCCTGAGCCCCAGCGTCCACGAAACCGTCCCTACTTCCAGCGGCGTCGGCAGCAGCCCCC
TGGCCCCCGGCAGCCTATAGCCGCAGAGACCTCCGCGCCTATCAACAGTGGGGACCCCCCCACCACCATA
CTGGAGTGA

Translation (282 aa):
MSRRAGQAGSAKALAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEF
DVVEGEKGAEAANVTGPGGVPVKGSRYAPNRRRFRRFIPRPRPAAPPPMVAEAPSGGTEPGSEGERAEDS
GQRPRRRRPPPFFYRRRFVRGPRPPNQQQPIEGSDGVEPKETAPLEGDQQQGDERVPPPRFRPRYRRPFR
PRPPQQPTTEGGDGETKPSQGPTDGSRPEPQRPRNRPYFQRRRQQPPGPRQPIAAETSAPINSGDPPTTI
LE


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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